View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15340_low_6 (Length: 268)

Name: NF15340_low_6
Description: NF15340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15340_low_6
NF15340_low_6
[»] chr2 (7 HSPs)
chr2 (1-160)||(5112611-5112769)
chr2 (187-233)||(13975200-13975246)
chr2 (194-230)||(12303455-12303491)
chr2 (187-225)||(40473500-40473538)
chr2 (194-227)||(30392789-30392822)
chr2 (194-227)||(33041820-33041853)
chr2 (185-225)||(33233160-33233200)
[»] chr8 (8 HSPs)
chr8 (194-253)||(10761873-10761932)
chr8 (187-227)||(33473305-33473345)
chr8 (187-225)||(1632390-1632428)
chr8 (187-225)||(21133089-21133127)
chr8 (194-230)||(11127979-11128015)
chr8 (194-230)||(32719565-32719601)
chr8 (194-230)||(34472374-34472410)
chr8 (194-230)||(44673605-44673641)
[»] chr4 (10 HSPs)
chr4 (195-251)||(41442873-41442929)
chr4 (202-232)||(32154326-32154356)
chr4 (184-225)||(1457965-1458006)
chr4 (194-227)||(6371194-6371227)
chr4 (194-227)||(13264231-13264264)
chr4 (194-227)||(26919425-26919458)
chr4 (188-233)||(42073232-42073277)
chr4 (194-227)||(51791332-51791365)
chr4 (194-230)||(10042375-10042411)
chr4 (195-227)||(53070082-53070114)
[»] scaffold0199 (1 HSPs)
scaffold0199 (194-241)||(8871-8918)
[»] chr7 (7 HSPs)
chr7 (195-234)||(31112970-31113009)
chr7 (187-225)||(7525526-7525564)
chr7 (202-232)||(9101318-9101348)
chr7 (194-227)||(26801686-26801719)
chr7 (194-227)||(28424288-28424321)
chr7 (194-227)||(47255047-47255080)
chr7 (194-230)||(36174467-36174503)
[»] chr5 (9 HSPs)
chr5 (187-225)||(6518726-6518764)
chr5 (187-225)||(42320399-42320437)
chr5 (194-227)||(546882-546915)
chr5 (194-227)||(9688629-9688662)
chr5 (194-227)||(22931574-22931607)
chr5 (194-234)||(2848286-2848326)
chr5 (195-227)||(6291831-6291863)
chr5 (193-225)||(6414149-6414181)
chr5 (194-230)||(21962062-21962098)
[»] chr3 (10 HSPs)
chr3 (194-228)||(21324702-21324736)
chr3 (187-225)||(27669003-27669041)
chr3 (187-225)||(28550263-28550301)
chr3 (187-225)||(32144666-32144704)
chr3 (187-225)||(34898717-34898755)
chr3 (195-240)||(5641572-5641617)
chr3 (194-227)||(15975232-15975265)
chr3 (194-230)||(15492168-15492204)
chr3 (195-227)||(19879281-19879313)
chr3 (194-230)||(53906456-53906492)
[»] chr1 (7 HSPs)
chr1 (187-225)||(4553496-4553534)
chr1 (187-225)||(25999932-25999970)
chr1 (194-252)||(33033181-33033239)
chr1 (194-227)||(47930628-47930661)
chr1 (194-230)||(7961780-7961816)
chr1 (194-230)||(9866141-9866177)
chr1 (194-230)||(48607706-48607742)
[»] scaffold0294 (1 HSPs)
scaffold0294 (194-227)||(17218-17251)
[»] chr6 (1 HSPs)
chr6 (194-251)||(31803552-31803609)


Alignment Details
Target: chr2 (Bit Score: 144; Significance: 9e-76; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 5112611 - 5112769
Alignment:
Q  1 atgctatttcatagttatactttatttgatatgttagataaaagagcatgacttaaaagaatttcattcaaaaatatgttcccctcaaaaataattaagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  5112611 atgctatttcatagttatactttatttgatatgttagataaaagagcatgacttaaa-gaatttcattaaaaaatgtgttcccctcaaaaataattaagt 5112709  T
Q  101 gtaatattttttgacgcagttaggtatattatagggaaaacactaataatttcattcctt 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5112710 gtaatattttttgacgcagttaggtatattatagggaaaacactaataatttcattcctt 5112769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 13975246 - 13975200
Alignment:
Q  187 aagtaaactagtgggtagagctcacacaatttaattgtgaaaaaatg 233  Q
    |||||| ||||||| |||||||||||||||||||||||||| |||||    
T  13975246 aagtaatctagtggctagagctcacacaatttaattgtgaagaaatg 13975200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 12303491 - 12303455
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaaaaa 230  Q
    ||||||| |||||||||||||||||||||||||||||    
T  12303491 ctagtggctagagctcacacaatttaattgtgaaaaa 12303455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 40473500 - 40473538
Alignment:
Q  187 aagtaaactagtgggtagagctcacacaatttaattgtg 225  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  40473500 aagtaacctagtggctagagctcacacaatttaattgtg 40473538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 30392789 - 30392822
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaa 227  Q
    ||||||| ||||||||||||||||||||||||||    
T  30392789 ctagtggttagagctcacacaatttaattgtgaa 30392822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 33041820 - 33041853
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaa 227  Q
    ||||||| ||||||||||||||||||||||||||    
T  33041820 ctagtggttagagctcacacaatttaattgtgaa 33041853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 33233160 - 33233200
Alignment:
Q  185 taaagtaaactagtgggtagagctcacacaatttaattgtg 225  Q
    |||||||| ||||||| |||| |||||||||||||||||||    
T  33233160 taaagtaacctagtggctagaactcacacaatttaattgtg 33233200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 253
Target Start/End: Complemental strand, 10761932 - 10761873
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaaaaaatgagatgtctagtgttcgaact 253  Q
    ||||||| |||||||||||||||||||||||| | || |||| ||||||| |||||||||    
T  10761932 ctagtggctagagctcacacaatttaattgtggagaagtgaggtgtctagggttcgaact 10761873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 33473305 - 33473345
Alignment:
Q  187 aagtaaactagtgggtagagctcacacaatttaattgtgaa 227  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  33473305 aagtaacctagtggctagagctcacacaatttaattgtgaa 33473345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 1632390 - 1632428
Alignment:
Q  187 aagtaaactagtgggtagagctcacacaatttaattgtg 225  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  1632390 aagtaacctagtggttagagctcacacaatttaattgtg 1632428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 21133127 - 21133089
Alignment:
Q  187 aagtaaactagtgggtagagctcacacaatttaattgtg 225  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  21133127 aagtagactagtggctagagctcacacaatttaattgtg 21133089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 11128015 - 11127979
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaaaaa 230  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  11128015 ctagtggctagagctcacacaatttaattgtggaaaa 11127979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 32719565 - 32719601
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaaaaa 230  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  32719565 ctagtggttagagctcacacaatttaattgtggaaaa 32719601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 34472410 - 34472374
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaaaaa 230  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  34472410 ctagtggttagagctcacacaatttaattgtggaaaa 34472374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 44673605 - 44673641
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaaaaa 230  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  44673605 ctagtggctagagctcacacaatttaattgtggaaaa 44673641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 41442873 - 41442929
Alignment:
Q  195 tagtgggtagagctcacacaatttaattgtgaaaaaatgagatgtctagtgttcgaa 251  Q
    |||||||||||| |||||||||||||||||||| || |||| ||||| | |||||||    
T  41442873 tagtgggtagagttcacacaatttaattgtgaagaagtgaggtgtctggggttcgaa 41442929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Original strand, 32154326 - 32154356
Alignment:
Q  202 tagagctcacacaatttaattgtgaaaaaat 232  Q
    |||||||||||||||||||||||||||||||    
T  32154326 tagagctcacacaatttaattgtgaaaaaat 32154356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 1457965 - 1458006
Alignment:
Q  184 gtaaagtaaactagtgggtagagctcacacaatttaattgtg 225  Q
    ||||||||  ||||||| ||||||||||||||||||||||||    
T  1457965 gtaaagtagcctagtggttagagctcacacaatttaattgtg 1458006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 6371227 - 6371194
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaa 227  Q
    ||||||| ||||||||||||||||||||||||||    
T  6371227 ctagtggctagagctcacacaatttaattgtgaa 6371194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 13264231 - 13264264
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaa 227  Q
    ||||||| ||||||||||||||||||||||||||    
T  13264231 ctagtggctagagctcacacaatttaattgtgaa 13264264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 26919425 - 26919458
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaa 227  Q
    ||||||| ||||||||||||||||||||||||||    
T  26919425 ctagtggctagagctcacacaatttaattgtgaa 26919458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 42073277 - 42073232
Alignment:
Q  188 agtaaactagtgggtagagctcacacaatttaattgtgaaaaaatg 233  Q
    |||| ||| |||| |||||||||||||||||||||||| |||||||    
T  42073277 agtagactggtggctagagctcacacaatttaattgtggaaaaatg 42073232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 51791365 - 51791332
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaa 227  Q
    ||||||| ||||||||||||||||||||||||||    
T  51791365 ctagtggttagagctcacacaatttaattgtgaa 51791332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 10042375 - 10042411
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaaaaa 230  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  10042375 ctagtggttagagttcacacaatttaattgtgaaaaa 10042411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 53070082 - 53070114
Alignment:
Q  195 tagtgggtagagctcacacaatttaattgtgaa 227  Q
    |||||| ||||||||||||||||||||||||||    
T  53070082 tagtggctagagctcacacaatttaattgtgaa 53070114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 8871 - 8918
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaaaaaatgagatgtct 241  Q
    ||||||| |||| ||||||||||||||||||||| ||||||| |||||    
T  8871 ctagtggctagaactcacacaatttaattgtgaagaaatgaggtgtct 8918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 31113009 - 31112970
Alignment:
Q  195 tagtgggtagagctcacacaatttaattgtgaaaaaatga 234  Q
    |||||| |||||||||||||||||||||||||| ||||||    
T  31113009 tagtggttagagctcacacaatttaattgtgaagaaatga 31112970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 7525564 - 7525526
Alignment:
Q  187 aagtaaactagtgggtagagctcacacaatttaattgtg 225  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  7525564 aagtaacctagtggctagagctcacacaatttaattgtg 7525526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Complemental strand, 9101348 - 9101318
Alignment:
Q  202 tagagctcacacaatttaattgtgaaaaaat 232  Q
    |||||||||||||||||||||||||||||||    
T  9101348 tagagctcacacaatttaattgtgaaaaaat 9101318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 26801686 - 26801719
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaa 227  Q
    ||||||| ||||||||||||||||||||||||||    
T  26801686 ctagtggctagagctcacacaatttaattgtgaa 26801719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 28424288 - 28424321
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaa 227  Q
    ||||||| ||||||||||||||||||||||||||    
T  28424288 ctagtggttagagctcacacaatttaattgtgaa 28424321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 47255047 - 47255080
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaa 227  Q
    ||||||| ||||||||||||||||||||||||||    
T  47255047 ctagtggctagagctcacacaatttaattgtgaa 47255080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 36174503 - 36174467
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaaaaa 230  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  36174503 ctagtggctagagctcacacaatttaattgtggaaaa 36174467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 6518726 - 6518764
Alignment:
Q  187 aagtaaactagtgggtagagctcacacaatttaattgtg 225  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  6518726 aagtaacctagtggctagagctcacacaatttaattgtg 6518764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 42320437 - 42320399
Alignment:
Q  187 aagtaaactagtgggtagagctcacacaatttaattgtg 225  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  42320437 aagtaacctagtggctagagctcacacaatttaattgtg 42320399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 546915 - 546882
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaa 227  Q
    ||||||| ||||||||||||||||||||||||||    
T  546915 ctagtggttagagctcacacaatttaattgtgaa 546882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 9688629 - 9688662
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaa 227  Q
    ||||||| ||||||||||||||||||||||||||    
T  9688629 ctagtggttagagctcacacaatttaattgtgaa 9688662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 22931574 - 22931607
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaa 227  Q
    ||||||| ||||||||||||||||||||||||||    
T  22931574 ctagtggttagagctcacacaatttaattgtgaa 22931607  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 2848326 - 2848286
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaaaaaatga 234  Q
    ||||||| |||||||||||||||||||||||| | ||||||    
T  2848326 ctagtggctagagctcacacaatttaattgtggagaaatga 2848286  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 6291831 - 6291863
Alignment:
Q  195 tagtgggtagagctcacacaatttaattgtgaa 227  Q
    |||||| ||||||||||||||||||||||||||    
T  6291831 tagtggctagagctcacacaatttaattgtgaa 6291863  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 6414181 - 6414149
Alignment:
Q  193 actagtgggtagagctcacacaatttaattgtg 225  Q
    |||||||| ||||||||||||||||||||||||    
T  6414181 actagtggctagagctcacacaatttaattgtg 6414149  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 21962062 - 21962098
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaaaaa 230  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  21962062 ctagtggctagagctcacacaatttaattgtggaaaa 21962098  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 21324702 - 21324736
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaaa 228  Q
    ||||||| |||||||||||||||||||||||||||    
T  21324702 ctagtggctagagctcacacaatttaattgtgaaa 21324736  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 27669041 - 27669003
Alignment:
Q  187 aagtaaactagtgggtagagctcacacaatttaattgtg 225  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  27669041 aagtaacctagtggctagagctcacacaatttaattgtg 27669003  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 28550263 - 28550301
Alignment:
Q  187 aagtaaactagtgggtagagctcacacaatttaattgtg 225  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  28550263 aagtagactagtggctagagctcacacaatttaattgtg 28550301  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 32144704 - 32144666
Alignment:
Q  187 aagtaaactagtgggtagagctcacacaatttaattgtg 225  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  32144704 aagtaacctagtggctagagctcacacaatttaattgtg 32144666  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 34898717 - 34898755
Alignment:
Q  187 aagtaaactagtgggtagagctcacacaatttaattgtg 225  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  34898717 aagtaatctagtggctagagctcacacaatttaattgtg 34898755  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 5641572 - 5641617
Alignment:
Q  195 tagtgggtagagctcacacaatttaattgtgaaaaaatgagatgtc 240  Q
    |||||| |||||||||||||||||||||||||| || |||| ||||    
T  5641572 tagtggctagagctcacacaatttaattgtgaagaagtgaggtgtc 5641617  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 15975265 - 15975232
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaa 227  Q
    ||||||| ||||||||||||||||||||||||||    
T  15975265 ctagtggttagagctcacacaatttaattgtgaa 15975232  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 15492204 - 15492168
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaaaaa 230  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  15492204 ctagtggctagagctcacacaatttaattgtggaaaa 15492168  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 19879313 - 19879281
Alignment:
Q  195 tagtgggtagagctcacacaatttaattgtgaa 227  Q
    |||||| ||||||||||||||||||||||||||    
T  19879313 tagtggctagagctcacacaatttaattgtgaa 19879281  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 53906492 - 53906456
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaaaaa 230  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  53906492 ctagtggctagagctcacacaatttaattgtggaaaa 53906456  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 4553496 - 4553534
Alignment:
Q  187 aagtaaactagtgggtagagctcacacaatttaattgtg 225  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  4553496 aagtaatctagtggttagagctcacacaatttaattgtg 4553534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 25999970 - 25999932
Alignment:
Q  187 aagtaaactagtgggtagagctcacacaatttaattgtg 225  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  25999970 aagtaatctagtggctagagctcacacaatttaattgtg 25999932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 33033239 - 33033181
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaaaaaatgagatgtctagtgttcgaac 252  Q
    ||||||| ||||||||||||| |||||||||| | ||||| | ||||||| ||||||||    
T  33033239 ctagtggttagagctcacacattttaattgtggagaaatggggtgtctagggttcgaac 33033181  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 47930628 - 47930661
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaa 227  Q
    ||||||| ||||||||||||||||||||||||||    
T  47930628 ctagtggttagagctcacacaatttaattgtgaa 47930661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 7961816 - 7961780
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaaaaa 230  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  7961816 ctagtggttagagctcacacaatttaattgtggaaaa 7961780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 9866141 - 9866177
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaaaaa 230  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  9866141 ctagtggctagagctcacacaatttaattgtggaaaa 9866177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 48607706 - 48607742
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaaaaa 230  Q
    ||||||| || ||||||||||||||||||||||||||    
T  48607706 ctagtggctaaagctcacacaatttaattgtgaaaaa 48607742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 17218 - 17251
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaa 227  Q
    ||||||| ||||||||||||||||||||||||||    
T  17218 ctagtggctagagctcacacaatttaattgtgaa 17251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 31803552 - 31803609
Alignment:
Q  194 ctagtgggtagagctcacacaatttaattgtgaaaaaatgagatgtctagtgttcgaa 251  Q
    ||||||| |||||||||||||||||||||||| | || |||| |||| || |||||||    
T  31803552 ctagtggctagagctcacacaatttaattgtggagaagtgaggtgtccagggttcgaa 31803609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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