View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15340_low_7 (Length: 259)
Name: NF15340_low_7
Description: NF15340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15340_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 1839637 - 1839406
Alignment:
| Q |
1 |
atgttaccaaagttatgattcattgttctcattgtctttgtgaaaaacactcacttagtgaaagtacgtaacatctactagtcccttcaaatacttaaaa |
100 |
Q |
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| T |
1839637 |
atgttaccaaagttatgattcattgttctcattgtctttgtgaaaaacactcacttagtgaaagtacgtaacatctactagtcccttaaaatacttaaaa |
1839538 |
T |
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| Q |
101 |
ttagagaccataaaacttctgaaacatgaagcaattggtaagagttgaatcccgagccgacattctttccactcagccggaccaaaacataaccagtctc |
200 |
Q |
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| T |
1839537 |
ttagagaccataaaacttctgaaacatgaagcaattggtaagagttgaatgccga-----------ttccactcagccggaccaaaacataaccagtctc |
1839449 |
T |
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| Q |
201 |
ttttgttagatcaacgtacaccaataacattgttcatcatttt |
243 |
Q |
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| T |
1839448 |
ttttgttagaccaacgtacaccaataacattgttcatcatttt |
1839406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 1842457 - 1842381
Alignment:
| Q |
136 |
tggtaagagttgaatcccgagccgacattctttccactcagccggaccaaaacata-acca-gtctcttttgttaga |
210 |
Q |
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| T |
1842457 |
tggtaagagctgaatgccgagccaacattctttccactcagcaggaccaaaccatagaccatgtctcttttgttaga |
1842381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 1832433 - 1832378
Alignment:
| Q |
136 |
tggtaagagttgaatcccgagccgacattctttccactcagccggaccaaaacata |
191 |
Q |
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| T |
1832433 |
tggtaagagctgaatgccgagccgacattctttccactcagcaggaccaaaccata |
1832378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 1847079 - 1847024
Alignment:
| Q |
136 |
tggtaagagttgaatcccgagccgacattctttccactcagccggaccaaaacata |
191 |
Q |
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| T |
1847079 |
tggtaagagctgaattccgagccgacattctttccactgagccggaccaaaccata |
1847024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 1836205 - 1836121
Alignment:
| Q |
155 |
agccgacattctttccactcagccggaccaaaacata-acca--gtctcttttgttagatcaacgtacaccaataacattgttca |
236 |
Q |
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| T |
1836205 |
agccgacattctttccactcagctggaccaaaccatagaccactgtctcttttgttagaccaaagtatactaataaccttgttca |
1836121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 6525846 - 6525938
Alignment:
| Q |
136 |
tggtaagagttgaatcccgagccgacattctttccactcagccggaccaaaacat-aacca--gtctcttttgttagatcaacgtacaccaat |
225 |
Q |
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| T |
6525846 |
tggtaagagctgaatcccaagcctacattctttccattcagctggaccaaaccataaaccactgtctcttttgttcgaccaaagtacaccaat |
6525938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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