View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15341_high_1 (Length: 692)

Name: NF15341_high_1
Description: NF15341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15341_high_1
NF15341_high_1
[»] chr4 (7 HSPs)
chr4 (362-551)||(19178690-19178877)
chr4 (139-340)||(19178413-19178614)
chr4 (2-77)||(43129043-43129118)
chr4 (249-327)||(46557223-46557301)
chr4 (139-218)||(43129218-43129291)
chr4 (377-470)||(3066924-3067017)
chr4 (372-432)||(3065788-3065848)
[»] chr3 (3 HSPs)
chr3 (371-450)||(1691648-1691727)
chr3 (386-470)||(1690754-1690838)
chr3 (402-465)||(24693794-24693857)
[»] chr5 (2 HSPs)
chr5 (372-470)||(1277799-1277898)
chr5 (269-336)||(43273537-43273604)
[»] chr8 (2 HSPs)
chr8 (399-470)||(16219826-16219897)
chr8 (372-470)||(16222511-16222611)
[»] chr2 (2 HSPs)
chr2 (372-470)||(12172419-12172518)
chr2 (395-464)||(12173401-12173470)
[»] chr7 (2 HSPs)
chr7 (270-327)||(10087906-10087963)
chr7 (287-327)||(29538085-29538125)
[»] chr1 (4 HSPs)
chr1 (267-311)||(8875288-8875332)
chr1 (276-327)||(9853667-9853718)
chr1 (372-438)||(45428574-45428641)
chr1 (400-433)||(45427551-45427584)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 9e-78; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 362 - 551
Target Start/End: Original strand, 19178690 - 19178877
Alignment:
Q  362 aacaattttcttttataaaacatgttttt-gattcccttatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcat 460  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19178690 aacaattttcttttataaaacatgttttttgattcccttatttaaaaagtcaacaaattttttggtccccctcccc-tcagaatgatgtggcaggctcat 19178788  T
Q  461 taatgccatgtaaacgtgctacttttgacggaatagatttatgccaagcccttatcaatgatggatttggcgagacaattactcccgtcat 551  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||    
T  19178789 taatgccatgtaagcgtgcta--tttgacggaatagatttatgccaagcccttgccaatgatggatttggcgagacaattactcctgtcat 19178877  T

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Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 139 - 340
Target Start/End: Original strand, 19178413 - 19178614
Alignment:
Q  139 atgcaaattaacctgaagagggaaatcaattatggtacacttactaataataatagataatgattatttcattatgctat-------ttgggggaccgga 231  Q
    |||||||||||| |||||||||||||||||||||||| |||       ||||||| ||||||||||||||||||||||||       |||||||||||||    
T  19178413 atgcaaattaacgtgaagagggaaatcaattatggtatact-------aataatacataatgattatttcattatgctatgcttaatttgggggaccgga 19178505  T
Q  232 atggtgcactcttgcccattatgatggaaattttgaggtttgaagctccgcagcggttaactgccgatggaaaataaccacatcggtagttaactatcgt 331  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||    
T  19178506 atggtgcactcttgcccattatgatggaaaatttgaggtttgaagctccgcagctgttaaccgccaatggaaaataaccacatcggtagttaactatcgt 19178605  T
Q  332 cggttactc 340  Q
    |||||||||    
T  19178606 cggttactc 19178614  T

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Target: chr4; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 43129043 - 43129118
Alignment:
Q  2 caatatatcaaatgtgatgatgtttgaattacgtaggcaaaatattaagtttaatgcaattgtcttgagaaggctt 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  43129043 caatatatcaaatgtgatgatgtttgaattacgtaggcaaaatattaagttaaatgcaattgccttgagaaggctt 43129118  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 46557223 - 46557301
Alignment:
Q  249 attatgatggaaattttgaggtttgaagctccgcagcggttaactgccgatggaaaataaccacatcggtagttaacta 327  Q
    ||||||||||||| ||| |||||||||||||||| ||  ||||||||||||| ||||||||||||||||||||||||||    
T  46557223 attatgatggaaaatttcaggtttgaagctccgcggcaattaactgccgatgaaaaataaccacatcggtagttaacta 46557301  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 43129218 - 43129291
Alignment:
Q  139 atgcaaattaacctgaagagggaaatcaattatggtacacttactaataataatagataatgattatttcattatgctat 218  Q
    |||||||||||| ||||||||||||||||||||||||   || |   |||||||| ||||| ||||||||||||||||||    
T  43129218 atgcaaattaacgtgaagagggaaatcaattatggta---ttgc---taataatatataattattatttcattatgctat 43129291  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 377 - 470
Target Start/End: Complemental strand, 3067017 - 3066924
Alignment:
Q  377 taaaacatgtttttgattccct-tatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaatgccatg 470  Q
    ||||||||||||||   ||||| |||||||||| ||||||| ||||||| ||||| |||||||||  |||||||| || ||||||||||| ||||    
T  3067017 taaaacatgttttttgatccctctatttaaaaaatcaacaatttttttgttcccc-tccccctcaagatgatgtgacatgctcattaatgacatg 3066924  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 372 - 432
Target Start/End: Original strand, 3065788 - 3065848
Alignment:
Q  372 ttttataaaacatgtttttgattcccttatttaaaaagtcaacaaattttttggtccccct 432  Q
    |||| ||||| |||||||| | || | ||||||||| || |||||||||||||||||||||    
T  3065788 ttttctaaaatatgttttttaatcgcctatttaaaatgttaacaaattttttggtccccct 3065848  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 371 - 450
Target Start/End: Complemental strand, 1691727 - 1691648
Alignment:
Q  371 cttttataaaacatgtttttgattcccttatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtg 450  Q
    ||||| |||||||||||||| || ||| |||||||||||||||||||||||||| || ||||||||||||| ||||||||    
T  1691727 cttttttaaaacatgttttttatccccctatttaaaaagtcaacaaattttttgatctccctccccctcaggatgatgtg 1691648  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 386 - 470
Target Start/End: Original strand, 1690754 - 1690838
Alignment:
Q  386 tttttgattcccttatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaatgccatg 470  Q
    |||||||| |||||||| |||||||||||| ||||||||||||||||||||||||  || | |||||| ||||||||||| ||||    
T  1690754 tttttgatccccttattcaaaaagtcaacatattttttggtccccctccccctcatgattacgtggcatgctcattaatgacatg 1690838  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 402 - 465
Target Start/End: Complemental strand, 24693857 - 24693794
Alignment:
Q  402 ttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaatg 465  Q
    ||||||| |||||||||||||||||||||||| | || |   |||||||||| |||||||||||    
T  24693857 ttaaaaaatcaacaaattttttggtccccctctctcttaaggtgatgtggcatgctcattaatg 24693794  T

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Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 372 - 470
Target Start/End: Complemental strand, 1277898 - 1277799
Alignment:
Q  372 ttttataaaacatgttttt-gattcccttatttaaaaagtcaacaaatt-ttttggtccccctccccctcagaatgatgtggcaggctcattaatgccat 469  Q
    ||||||||||||||||||| ||| ||| |||||||||||| |||||||| ||||||||||||||||| |||| ||||||| ||| ||||||||||| |||    
T  1277898 ttttataaaacatgttttttgatccccctatttaaaaagttaacaaatttttttggtccccctccccttcaggatgatgt-gcatgctcattaatgacat 1277800  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 43273537 - 43273604
Alignment:
Q  269 gtttgaagctccgcagcggttaactgccgatggaaaataaccacatcggtagttaactatcgtcggtt 336  Q
    |||| ||||||| | || ||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  43273537 gtttaaagctccacggcagttaactgctgatggaaaataaccacatcggtagttaactatcgccggtt 43273604  T

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Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 399 - 470
Target Start/End: Complemental strand, 16219897 - 16219826
Alignment:
Q  399 tatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaatgccatg 470  Q
    |||||||||||| |||||||||||||||||||||||| | | ||||||||||||| ||||||||||| ||||    
T  16219897 tatttaaaaagtgaacaaattttttggtccccctccctccctgaatgatgtggcatgctcattaatgacatg 16219826  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 372 - 470
Target Start/End: Complemental strand, 16222611 - 16222511
Alignment:
Q  372 ttttataaaacatgttttt-gattccct-tatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaatgccat 469  Q
    |||| |||||||||||||| ||| |||  |||||||||||| ||||||||||||||||||||||||||   | ||||||||||| ||||||||||| |||    
T  16222611 ttttctaaaacatgttttttgatcccccctatttaaaaagtgaacaaattttttggtccccctcccccctcggatgatgtggcatgctcattaatgacat 16222512  T
Q  470 g 470  Q
    |    
T  16222511 g 16222511  T

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Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 372 - 470
Target Start/End: Original strand, 12172419 - 12172518
Alignment:
Q  372 ttttataaaacatgttttt-gattcccttatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaatgccatg 470  Q
    |||| |||||||||||||| ||  ||| ||||||||||||||||||||||||||||| |||||||  |||| ||||||||| | ||||||||||| ||||    
T  12172419 ttttctaaaacatgttttttgacccccctatttaaaaagtcaacaaattttttggtcaccctccctttcaggatgatgtggtatgctcattaatgacatg 12172518  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 395 - 464
Target Start/End: Complemental strand, 12173470 - 12173401
Alignment:
Q  395 cccttatttaaaaagtcaacaaattttttggtccccctccccctcagaatgatgtggcaggctcattaat 464  Q
    ||||| |||||||||||||||||||||||| || ||||||||||||| ||||||||||| | ||||||||    
T  12173470 cccttgtttaaaaagtcaacaaattttttgctcaccctccccctcaggatgatgtggcatgttcattaat 12173401  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 270 - 327
Target Start/End: Complemental strand, 10087963 - 10087906
Alignment:
Q  270 tttgaagctccgcagcggttaactgccgatggaaaataaccacatcggtagttaacta 327  Q
    ||||||||||||| || ||| |||| ||||||||||||||||||||| ||||||||||    
T  10087963 tttgaagctccgcggcagtttactgtcgatggaaaataaccacatcgatagttaacta 10087906  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 29538085 - 29538125
Alignment:
Q  287 gttaactgccgatggaaaataaccacatcggtagttaacta 327  Q
    |||||||||||||| |||||||||||||||  |||||||||    
T  29538085 gttaactgccgatgaaaaataaccacatcgaaagttaacta 29538125  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 8875332 - 8875288
Alignment:
Q  267 aggtttgaagctccgcagcggttaactgccgatggaaaataacca 311  Q
    ||||||||||||| ||||| ||||| |||||||||||||||||||    
T  8875332 aggtttgaagctctgcagcagttaattgccgatggaaaataacca 8875288  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 9853667 - 9853718
Alignment:
Q  276 gctccgcagcggttaactgccgatggaaaataaccacatcggtagttaacta 327  Q
    |||||||||| ||||||| || ||||||||||||||||||  ||||||||||    
T  9853667 gctccgcagcagttaacttccaatggaaaataaccacatcaatagttaacta 9853718  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 45428641 - 45428574
Alignment:
Q  372 ttttataaaacatgtttttgattc-ccttatttaaaaagtcaacaaattttttggtccccctccccct 438  Q
    |||| |||||||||||||| ||   |||| || ||||||||||||||||||||||| |||||||||||    
T  45428641 ttttctaaaacatgttttttatcatcctttttaaaaaagtcaacaaattttttggttcccctccccct 45428574  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 433
Target Start/End: Original strand, 45427551 - 45427584
Alignment:
Q  400 atttaaaaagtcaacaaattttttggtccccctc 433  Q
    ||||||||||||||||||| ||||||||||||||    
T  45427551 atttaaaaagtcaacaaatcttttggtccccctc 45427584  T

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