View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15341_high_12 (Length: 374)
Name: NF15341_high_12
Description: NF15341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15341_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 12 - 354
Target Start/End: Complemental strand, 55172611 - 55172269
Alignment:
| Q |
12 |
catcatcaagctagctggcaaataattaattcatttattgattataatgaatgaacagattgtttcacaacataataaaaggaacttcgtgaagtctgct |
111 |
Q |
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| T |
55172611 |
catcatcaagctagctggcaaataattaattcatttattgattataatgaatgaacagattgtttcacaacataataaaaggaacttcgtgaagtctgct |
55172512 |
T |
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| Q |
112 |
gtcgcaaacaacctcaaatgggagctgtttcttgaggcaattccatcatctaagaaacttgaatcaaatcaaaaaattccattagagctttacacaatgc |
211 |
Q |
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| T |
55172511 |
gtcgcaaacaacctcaaatgggagctgtttcttgaggcaattccatcatctaagaaacttgaatcaaatcaaaaaattccattagagctttacacattgc |
55172412 |
T |
|
| Q |
212 |
ttaaagacaccacagattatggatggtacaccaccaggtgaggattcattcattcaaccttaattaaatttgaaatatgcaactcattccccacatctat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55172411 |
ttaaagacaccacagattatggatggtacaccaccaggtgaggattcattcattcaaccttaattaaatttgaaatatgcaactcattccccacatctat |
55172312 |
T |
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| Q |
312 |
cataaattaattatggtttttctaatgcagctttgagttgggt |
354 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
55172311 |
cataaattatttatggtttttctaatgcagctttgagttgggt |
55172269 |
T |
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