View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15341_high_15 (Length: 250)

Name: NF15341_high_15
Description: NF15341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15341_high_15
NF15341_high_15
[»] chr7 (9 HSPs)
chr7 (116-236)||(10516660-10516782)
chr7 (3-70)||(27248691-27248758)
chr7 (1-53)||(9821149-9821201)
chr7 (1-53)||(10723074-10723126)
chr7 (7-63)||(14543637-14543692)
chr7 (3-67)||(48448669-48448733)
chr7 (3-52)||(46242342-46242391)
chr7 (3-55)||(38850853-38850905)
chr7 (3-55)||(47080768-47080820)
[»] chr8 (9 HSPs)
chr8 (116-236)||(33230155-33230277)
chr8 (1-62)||(1226653-1226713)
chr8 (12-83)||(29359534-29359605)
chr8 (3-55)||(29917786-29917838)
chr8 (4-67)||(11335276-11335339)
chr8 (3-55)||(8496744-8496796)
chr8 (11-67)||(13888476-13888532)
chr8 (3-51)||(23849766-23849814)
chr8 (3-55)||(29616184-29616236)
[»] chr2 (3 HSPs)
chr2 (3-64)||(8924590-8924651)
chr2 (3-89)||(33046061-33046147)
chr2 (3-68)||(41465229-41465294)
[»] chr3 (8 HSPs)
chr3 (3-62)||(22755837-22755896)
chr3 (3-55)||(5852515-5852567)
chr3 (3-55)||(9281319-9281371)
chr3 (3-57)||(4016616-4016670)
chr3 (24-57)||(21894250-21894283)
chr3 (39-67)||(1779039-1779067)
chr3 (3-55)||(33462856-33462908)
chr3 (3-55)||(43394415-43394467)
[»] chr6 (3 HSPs)
chr6 (3-82)||(16120712-16120791)
chr6 (3-62)||(26210898-26210957)
chr6 (3-67)||(35117427-35117491)
[»] chr4 (6 HSPs)
chr4 (1-58)||(20651559-20651616)
chr4 (1-66)||(27982697-27982762)
chr4 (24-100)||(2711346-2711422)
chr4 (11-67)||(6829322-6829378)
chr4 (1-55)||(52818550-52818604)
chr4 (3-55)||(29821201-29821253)
[»] chr5 (5 HSPs)
chr5 (3-59)||(21031785-21031841)
chr5 (3-58)||(36578737-36578792)
chr5 (1-58)||(41625196-41625253)
chr5 (3-55)||(1918691-1918743)
chr5 (5-57)||(39482781-39482833)
[»] chr1 (4 HSPs)
chr1 (3-58)||(8980825-8980880)
chr1 (25-63)||(32834954-32834992)
chr1 (180-236)||(34157182-34157240)
chr1 (6-62)||(38786804-38786860)
[»] scaffold0373 (1 HSPs)
scaffold0373 (11-67)||(7042-7098)
[»] scaffold0385 (1 HSPs)
scaffold0385 (3-55)||(2081-2133)
[»] scaffold0085 (1 HSPs)
scaffold0085 (30-58)||(43680-43708)


Alignment Details
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 10516660 - 10516782
Alignment:
Q  116 tatctttttaatttcaatttgacccaaaaacaatttaatggttatcacttcagcgacttccatgacggtgctcaccaac--ctctatcacacgactataa 213  Q
    |||| |||| |||||||||| ||||||||||||||| || |||||||||  || | ||| |||||||||| ||||||||  |||||||||| ||||| ||    
T  10516660 tatccttttgatttcaatttcacccaaaaacaattttattgttatcactctagtggctttcatgacggtgttcaccaacctctctatcacatgactacaa 10516759  T
Q  214 tatttttgcttggtttttctatt 236  Q
    |||||||||||||||| ||||||    
T  10516760 tatttttgcttggtttctctatt 10516782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 27248758 - 27248691
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaattgtgtattagtatatg 70  Q
    ||||||| |||||| ||||| |||||||  | ||| |||||||||||||||||||| |||||||||||    
T  27248758 aaatttttataattttttctaatagattagttaagttatttaagatcaaaattgtgcattagtatatg 27248691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 9821201 - 9821149
Alignment:
Q  1 ttaaattttcataattatttctgatagatttttaaagatatttaagatcaaaa 53  Q
    |||||||||||||||| ||||| ||||||  ||||||||||||||||| ||||    
T  9821201 ttaaattttcataattttttctaatagataattaaagatatttaagataaaaa 9821149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 10723126 - 10723074
Alignment:
Q  1 ttaaattttcataattatttctgatagatttttaaagatatttaagatcaaaa 53  Q
    |||||||||||||||| ||||| ||||||  ||||||||||||||||| ||||    
T  10723126 ttaaattttcataattttttctaatagataattaaagatatttaagataaaaa 10723074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 14543692 - 14543637
Alignment:
Q  7 tttcataattatttctgatagatttttaaagatatttaagatcaaaattgtgtatta 63  Q
    |||||||||| ||||| ||||||| ||||||||||||||  ||||||||||||||||    
T  14543692 tttcataatt-tttctaatagattattaaagatatttaaactcaaaattgtgtatta 14543637  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 48448669 - 48448733
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaattgtgtattagtat 67  Q
    |||||||||||||| ||||| ||| ||| || |||||||||||| |||||||| || ||||||||    
T  48448669 aaattttcataattttttctaatatattattcaagatatttaagctcaaaattatgcattagtat 48448733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 46242391 - 46242342
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaa 52  Q
    |||||||||||||| ||||||||| ||| || |||||||||||| |||||    
T  46242391 aaattttcataattttttctgatatattatttaagatatttaagctcaaa 46242342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 38850853 - 38850905
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaatt 55  Q
    |||||||||||||| ||||| ||| ||| || |||||||||||| ||||||||    
T  38850853 aaattttcataattttttctaatatattattcaagatatttaagctcaaaatt 38850905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 47080768 - 47080820
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaatt 55  Q
    ||||||| |||||| ||||| |||||||  ||||| |||||||||||||||||    
T  47080768 aaatttttataattttttctaatagattagtaaagttatttaagatcaaaatt 47080820  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 33230277 - 33230155
Alignment:
Q  116 tatctttttaatttcaatttgacccaaaaacaatttaatggttatcacttcagcgacttccatgacggtgctcaccaac--ctctatcacacgactataa 213  Q
    |||| ||||||||||||||| ||||||||||||||| || |||||||||  || | ||| |||||||||| ||||||||  ||||||||||  |||| ||    
T  33230277 tatccttttaatttcaatttcacccaaaaacaattttattgttatcactctagtggctttcatgacggtgttcaccaacctctctatcacatcactacaa 33230178  T
Q  214 tatttttgcttggtttttctatt 236  Q
     ||||||||||||||| ||||||    
T  33230177 gatttttgcttggtttctctatt 33230155  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1226653 - 1226713
Alignment:
Q  1 ttaaattttcataattatttctgatagatttttaaagatatttaagatcaaaattgtgtatt 62  Q
    |||||||||||||||| |||||  |||||| ||||||||||||||| |||||||||||||||    
T  1226653 ttaaattttcataatt-tttctattagattattaaagatatttaagttcaaaattgtgtatt 1226713  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 29359605 - 29359534
Alignment:
Q  12 taattatttctgatagatttttaaagatatttaagatcaaaattgtgtattagtatatgcgataaagtcaaa 83  Q
    ||||| ||||| |||||||  ||||| |||||||||||||||||||| |||| |||||| || |||||||||    
T  29359605 taattttttctaatagattagtaaagttatttaagatcaaaattgtgcattaatatatgtgacaaagtcaaa 29359534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 29917838 - 29917786
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaatt 55  Q
    |||||||||||||| ||||| ||| ||| || |||||||||||||||||||||    
T  29917838 aaattttcataattttttctaatatattattcaagatatttaagatcaaaatt 29917786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 11335339 - 11335276
Alignment:
Q  4 aattttcataattatttctgatagatttttaaagatatttaagatcaaaattgtgtattagtat 67  Q
    |||||| |||||| ||||| ||| ||| | |||||||||||||||||||||| |||||| ||||    
T  11335339 aatttttataattttttctaataaattataaaagatatttaagatcaaaattttgtattggtat 11335276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 8496796 - 8496744
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaatt 55  Q
    |||||||||||||| ||||| ||| ||| || |||||||||||| ||||||||    
T  8496796 aaattttcataattttttctaatatattattcaagatatttaagctcaaaatt 8496744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 13888532 - 13888476
Alignment:
Q  11 ataattatttctgatagatttttaaagatatttaagatcaaaattgtgtattagtat 67  Q
    |||||| ||||| |||||||  ||||| |||||||||||||||||||| ||| ||||    
T  13888532 ataattttttctaatagattagtaaagttatttaagatcaaaattgtgcattggtat 13888476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 23849766 - 23849814
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaa 51  Q
    |||||||||||||| ||||| ||| ||| ||||||||||||||| ||||    
T  23849766 aaattttcataattttttctaataaattattaaagatatttaagttcaa 23849814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 29616236 - 29616184
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaatt 55  Q
    |||||||||||||| ||||| ||| ||| || |||||||||||| ||||||||    
T  29616236 aaattttcataattttttctaatatattattcaagatatttaagctcaaaatt 29616184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 8924651 - 8924590
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaattgtgtattag 64  Q
    ||||||| |||||| ||||| ||||||| |||||||||||||||||||||||||||||||||    
T  8924651 aaatttttataattttttctaatagattattaaagatatttaagatcaaaattgtgtattag 8924590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 33046147 - 33046061
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaattgtgtattagtatatgcgataaagtcaaatgtgtc 89  Q
    ||||||| |||||| ||||| |||||||  ||||| ||||||||||| ||||| || ||| |||| ||  |||||||||| ||||||    
T  33046147 aaatttttataattttttctaatagattagtaaagttatttaagatcgaaattatgcattggtatgtgttataaagtcaactgtgtc 33046061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 41465229 - 41465294
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaattgtgtattagtata 68  Q
    |||||||||||||| ||||| ||||||| ||||| | | ||||| ||||||||||| ||| |||||    
T  41465229 aaattttcataattttttctaatagattattaaaaacacttaagttcaaaattgtgcattggtata 41465294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 22755837 - 22755896
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaattgtgtatt 62  Q
    |||||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||    
T  22755837 aaattttcataattttttctaatagattgttcaagatatttaagatcaaaattgtgtatt 22755896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 5852567 - 5852515
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaatt 55  Q
    ||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||    
T  5852567 aaatttttataattttttctaatagattattaaagatatttaagatcaaaatt 5852515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 9281371 - 9281319
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaatt 55  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||    
T  9281371 aaattttcataattttttctaatagattattaaagatatttaagttcaaaatt 9281319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 4016616 - 4016670
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaattgt 57  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||| | ||||||||    
T  4016616 aaattttcataattttttctaatagattattaaagatatttaagtttaaaattgt 4016670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 21894283 - 21894250
Alignment:
Q  24 atagatttttaaagatatttaagatcaaaattgt 57  Q
    ||||||| ||||||||||||||||||||||||||    
T  21894283 atagattattaaagatatttaagatcaaaattgt 21894250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 1779039 - 1779067
Alignment:
Q  39 tatttaagatcaaaattgtgtattagtat 67  Q
    |||||||||||||||||||||||||||||    
T  1779039 tatttaagatcaaaattgtgtattagtat 1779067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 33462856 - 33462908
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaatt 55  Q
    |||||||||||||| ||||| ||| ||| || |||||||||||| ||||||||    
T  33462856 aaattttcataattttttcttatatattattcaagatatttaagctcaaaatt 33462908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 43394467 - 43394415
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaatt 55  Q
    |||||||||||||| ||||| ||| ||| || |||||||||||| ||||||||    
T  43394467 aaattttcataattttttctaatatattattcaagatatttaagctcaaaatt 43394415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 16120791 - 16120712
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaattgtgtattagtatatgcgataaagtcaa 82  Q
    ||||||| |||||| ||||| ||||||| |||||| ||||||| |||||||||||||||| |||| || || ||||||||    
T  16120791 aaatttttataattttttctaatagattattaaagttatttaatatcaaaattgtgtattggtatttgtgacaaagtcaa 16120712  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 26210898 - 26210957
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaattgtgtatt 62  Q
    |||||||||||||| ||||| ||| ||| ||||||||||||||| |||||||| ||||||    
T  26210898 aaattttcataattttttctaatatattattaaagatatttaagttcaaaattatgtatt 26210957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 35117427 - 35117491
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaattgtgtattagtat 67  Q
    |||||||||||||| ||||| ||| ||| |  |||||||||||| |||||||| || ||||||||    
T  35117427 aaattttcataattttttctaatatattatccaagatatttaagctcaaaattatgcattagtat 35117491  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 20651559 - 20651616
Alignment:
Q  1 ttaaattttcataattatttctgatagatttttaaagatatttaagatcaaaattgtg 58  Q
    ||||||||| |||||| ||||||||||||| ||||| ||||||||| |||||||||||    
T  20651559 ttaaatttttataattttttctgatagattattaaaaatatttaagttcaaaattgtg 20651616  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 27982697 - 27982762
Alignment:
Q  1 ttaaattttcataattatttctgatagatttttaaagatatttaagatcaaaattgtgtattagta 66  Q
    ||||||||| |||||| ||||| |||||||  ||||||||||||||| |||||||||  |||||||    
T  27982697 ttaaatttttataattttttctaatagattagtaaagatatttaagaccaaaattgtacattagta 27982762  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 2711422 - 2711346
Alignment:
Q  24 atagatttttaaagatatttaagatcaaaattgtgtattagtatatgcgataaagtcaaatgtgtcgcataatataa 100  Q
    ||||||||||||| ||||||||||||||||||||  | ||  ||| | |||| |||||| |||||| ||||||||||    
T  2711422 atagatttttaaaaatatttaagatcaaaattgtacactaacatacgtgatagagtcaattgtgtcacataatataa 2711346  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 6829378 - 6829322
Alignment:
Q  11 ataattatttctgatagatttttaaagatatttaagatcaaaattgtgtattagtat 67  Q
    |||||| ||||| | |||||  ||||| |||||||||||||||||||||||||||||    
T  6829378 ataattttttctaagagattagtaaagttatttaagatcaaaattgtgtattagtat 6829322  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 52818604 - 52818550
Alignment:
Q  1 ttaaattttcataattatttctgatagatttttaaagatatttaagatcaaaatt 55  Q
    |||||||||||||||| ||||| ||| ||| || |||||||||||| ||||||||    
T  52818604 ttaaattttcataattttttctaatatattattcaagatatttaagctcaaaatt 52818550  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 29821201 - 29821253
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaatt 55  Q
    |||||||||||||| ||||| ||| ||| || |||||||||||| ||||||||    
T  29821201 aaattttcataattttttctaatatattattcaagatatttaagctcaaaatt 29821253  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 21031785 - 21031841
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaattgtgt 59  Q
    ||||||| |||||| ||||| ||| ||| ||||||||||||||||||||||||||||    
T  21031785 aaatttttataattttttctaatatattattaaagatatttaagatcaaaattgtgt 21031841  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 36578737 - 36578792
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaattgtg 58  Q
    |||||||||||||| ||||| ||||||| || |||||||||||||| |||||||||    
T  36578737 aaattttcataattttttctaatagattattcaagatatttaagatgaaaattgtg 36578792  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 41625253 - 41625196
Alignment:
Q  1 ttaaattttcataattatttctgatagatttttaaagatatttaagatcaaaattgtg 58  Q
    |||||||||||||||| ||||  ||| ||| ||||||||||||||  |||||||||||    
T  41625253 ttaaattttcataattttttcgaataaattattaaagatatttaaattcaaaattgtg 41625196  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 1918743 - 1918691
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaatt 55  Q
    |||||||||||||| ||||| ||| ||| || |||||||||||| ||||||||    
T  1918743 aaattttcataattttttctaatatattattcaagatatttaaggtcaaaatt 1918691  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 39482833 - 39482781
Alignment:
Q  5 attttcataattatttctgatagatttttaaagatatttaagatcaaaattgt 57  Q
    ||||| |||||| ||||| ||||||| ||||| ||||||||||||| ||||||    
T  39482833 atttttataattttttctaatagattattaaatatatttaagatcataattgt 39482781  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 8980825 - 8980880
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaattgtg 58  Q
    |||||||||||||| ||||| ||||||| ||||| ||||||||| |||||||||||    
T  8980825 aaattttcataattttttctaatagattattaaaaatatttaagttcaaaattgtg 8980880  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 32834954 - 32834992
Alignment:
Q  25 tagatttttaaagatatttaagatcaaaattgtgtatta 63  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  32834954 tagatttttaaagatatttaagttcaaaattgtgtatta 32834992  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 34157182 - 34157240
Alignment:
Q  180 acggtgctcaccaacctct--atcacacgactataatatttttgcttggtttttctatt 236  Q
    |||||||||||||||||||  |||||| ||||| || ||||||||||||||| ||||||    
T  34157182 acggtgctcaccaacctctctatcacatgactacaagatttttgcttggtttctctatt 34157240  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 38786860 - 38786804
Alignment:
Q  6 ttttcataattatttctgatagatttttaaagatatttaagatcaaaattgtgtatt 62  Q
    ||||||||||| ||||| ||| ||| ||||||||||||||  |||||||| ||||||    
T  38786860 ttttcataattttttctaatatattattaaagatatttaaactcaaaattatgtatt 38786804  T

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Target: scaffold0373 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 7042 - 7098
Alignment:
Q  11 ataattatttctgatagatttttaaagatatttaagatcaaaattgtgtattagtat 67  Q
    |||||| ||||| | |||||  ||||| |||||||||||||||||||||||||||||    
T  7042 ataattttttctaagagattagtaaagttatttaagatcaaaattgtgtattagtat 7098  T

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Target: scaffold0385 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 2133 - 2081
Alignment:
Q  3 aaattttcataattatttctgatagatttttaaagatatttaagatcaaaatt 55  Q
    ||||| |||||||| ||||||||| ||| || |||||||||||| ||||||||    
T  2133 aaattctcataattttttctgatatattattcaagatatttaagttcaaaatt 2081  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 43708 - 43680
Alignment:
Q  30 ttttaaagatatttaagatcaaaattgtg 58  Q
    |||||||||||||||||||||||||||||    
T  43708 ttttaaagatatttaagatcaaaattgtg 43680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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