View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15341_high_20 (Length: 216)
Name: NF15341_high_20
Description: NF15341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15341_high_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 8157368 - 8157169
Alignment:
| Q |
1 |
aaaagaaaagaaggaagatacaaatccattacaaacaaaattagagaataaatcattttgtgcatacaacaaagctttcatttaagcaaatgaagtgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8157368 |
aaaagaaaagaaggaagatacaaatccattacaaacaaaattagagaataaatcattttgtgcatacaacaaagctttcatttaagcaaatgaagtgaaa |
8157269 |
T |
|
| Q |
101 |
attaatgctatttagctcttcttggcaaagcaaatgaagtgaaaattgaagctattgctgtagttagaaatcctaaaagaagaaggctagttgaggcatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8157268 |
attaatgctatttagctcttcttggcaaagcaaatgaagtgaaaattgaagctattgctgtagttagaaatcctaaaagaagaaggctagttgaggcatt |
8157169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 8164016 - 8163953
Alignment:
| Q |
122 |
ttggcaaagcaaatgaagtgaaaattgaagctattgctgtagttagaaatcctaaaagaagaag |
185 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| ||||| || |||||||| || |||||||| |
|
|
| T |
8164016 |
ttggcaaagcaaatgaagtgaaaactgatgctatggctgtggtgagaaatccaaatagaagaag |
8163953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University