View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15341_high_4 (Length: 481)
Name: NF15341_high_4
Description: NF15341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15341_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 21 - 304
Target Start/End: Complemental strand, 48431546 - 48431263
Alignment:
| Q |
21 |
tgaacgttctagctccatccagccctctcttccttcaagctaggcagggcacgcaagaagagaaataaagctcaaagagttataattttatgaatctagt |
120 |
Q |
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| T |
48431546 |
tgaacgttctagctccatccagccctctcttccttcaagctaggcagggcacgcaagaagagaaataaagctcaaagagttataattttatgaatctagt |
48431447 |
T |
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| Q |
121 |
tttgttcttgtaatgtatggattaaaagttgctcgtgatgttattccaggttaagtatacacaatttctccttgagtctggagcaaaagtggattctttg |
220 |
Q |
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| T |
48431446 |
tttgttcttgtaatgtatggattaaaagttgctcgtgatgttattccaggttaagtatacacaatttctccttgagtctggagcaaaagtggattctttg |
48431347 |
T |
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| Q |
221 |
gataagaacaagaacacaacttttcatcatgcatcaggttatgacaagaaggaatgtgtgggcatgaatttgagtattaaattt |
304 |
Q |
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| T |
48431346 |
gataagtacaagaacacaacttttcatcatgcatcaggttatgacaagaaggaatgtgtgggcatgaatttgagtatcaaattt |
48431263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 354 - 421
Target Start/End: Complemental strand, 48431266 - 48431199
Alignment:
| Q |
354 |
atttcattcattgttattttagtatattaatgtcatgtagtcctacactgatttgtgctttcattccc |
421 |
Q |
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| T |
48431266 |
atttcattcattgttattttagtatattaatgtcatgtcgtcctacactgatttgtgctttcattccc |
48431199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 133 - 281
Target Start/End: Original strand, 1925459 - 1925606
Alignment:
| Q |
133 |
atgtatggattaaaagttgctcgtgatgttattccaggttaagtatacacaatttctccttgagtctggagcaaaagtggattctttggataagaacaag |
232 |
Q |
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| T |
1925459 |
atgtatggattaaaatatgctcctgatat-attccaggtgaagtgtgcgcaagctctccttgaggctggagcaaaagtagatgctttggataagaacaag |
1925557 |
T |
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| Q |
233 |
aacacaacttttcatcatgcatcaggttatgacaagaaggaatgtgtgg |
281 |
Q |
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| T |
1925558 |
aacacagctcttcattatgcagcaggttatggcaggaaagaatgtgtgg |
1925606 |
T |
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