View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15341_high_6 (Length: 428)
Name: NF15341_high_6
Description: NF15341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15341_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 15 - 397
Target Start/End: Original strand, 4824056 - 4824438
Alignment:
| Q |
15 |
tacaatagggacgccaattgcgcgacagcttttctttccattccccgaaatcagttaaaatacaaataccatctgcatcttttgtttccaatattcagaa |
114 |
Q |
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| T |
4824056 |
tacaatagggacaccaattgcgcgacagcttttctttccattccccgaaatcagttaaaatacaaataccatctgcatcttttgtttccaatattcagaa |
4824155 |
T |
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| Q |
115 |
acttctggtaaaacatgacactcacaaatgtaaaccaggttcaatatatccttttggaagcaaaaaccaccaaaagcgatacttgcattctagaacatca |
214 |
Q |
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| T |
4824156 |
acttctggtaaaacatgacactcacaaatgtaaaccaggttcaatatatccttttggaagcaaaaaccaccaaaaacgatacttgcattctagaacatca |
4824255 |
T |
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| Q |
215 |
gtgctgaagaaaaaggttcagtagttttaacaagaagagttgatttctctacaaaaattttgtcggacttgagacatcggtgatcattcaagccgcacta |
314 |
Q |
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| T |
4824256 |
gtgctgaagaaaaaggttcagcagttttgacaagaagagttgatttctctacaacaattttgtcggacttgagacatcggtgatcattcaagccgcacta |
4824355 |
T |
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| Q |
315 |
tcccaatacgtcaaatctccggctttgccaactccgagaccactagttttcgtcgttgtgttgactgatataaacacaatgtc |
397 |
Q |
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| T |
4824356 |
tcccaatacgtcaaatctccggcttttccaactccgagaccactagttttcgtcgttgtgttgactgatataaacacaatgtc |
4824438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 216
Target Start/End: Original strand, 4806187 - 4806303
Alignment:
| Q |
99 |
tttccaatattcagaaacttctggtaaaacatgacactcacaaatgtaaaccaggttcaatatatccttttggaagcaaaaaccaccaaaagcgatactt |
198 |
Q |
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| T |
4806187 |
tttccaatattcagcaacttctggtaaatcattacacacacaaatgaaaaccaggtt-aatatatcttttcggaagaaagaaccaccaaaaccgacgttt |
4806285 |
T |
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| Q |
199 |
gcattctagaacatcagt |
216 |
Q |
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|||||| ||||| ||||| |
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| T |
4806286 |
gcattcaagaacttcagt |
4806303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 4819118 - 4819204
Alignment:
| Q |
96 |
ttgtttccaatattcagaaacttctggtaaaacatgacactcacaaatgtaaaccaggttcaatatatccttttggaagcaaaaacc |
182 |
Q |
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| T |
4819118 |
ttgtttctaatattcagaaacttcaaataaaccattatacacgcaaatgtaaaccaggttcagtatatctttttggaagcaagaacc |
4819204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 423
Target Start/End: Original strand, 4829157 - 4829343
Alignment:
| Q |
237 |
agttttaacaagaagagttgatttctctacaaaaattttgtcggact-tgagacatcggtgatcattcaagccgcactatcccaatacgtcaaatctccg |
335 |
Q |
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| T |
4829157 |
agtttttacaggaatagttgatttctctacaacaatttt-tcggactaagacacatcggcaatcacccgagtcgcactctcccaatacgtcaaatctact |
4829255 |
T |
|
| Q |
336 |
gctttgccaactccgagaccactagttttcgtcgttgtgttgactgatataaacacaatgtcagcttcgtagacttgtttttaaacat |
423 |
Q |
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| T |
4829256 |
acttttccagccctgagaccgcgagtttttgtcagtgtatcaacagatacaaacactatgtcagcttcgtagacatattttttaacat |
4829343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 4825117 - 4825162
Alignment:
| Q |
132 |
acactcacaaatgtaaaccaggttcaatatatccttttggaagcaa |
177 |
Q |
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| T |
4825117 |
acactcacaaatgtaaaccaagttcaatatatcttcttcgaagcaa |
4825162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 408
Target Start/End: Original strand, 18937515 - 18937610
Alignment:
| Q |
313 |
tatcccaatacgtcaaatctccggctttgccaactccgagaccactagttttcgtcgttgtgttgactgatataaacacaatgtcagcttcgtaga |
408 |
Q |
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| T |
18937515 |
tatcccaatatgtcaaatctgcagatttgccaactcctagaccgcaagttctagtcgttgtgttgacggatacaataacaatgtcaacttcgtaga |
18937610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 343
Target Start/End: Original strand, 3664891 - 3664983
Alignment:
| Q |
252 |
agttgatttctctacaaaaattttgtcggactt-gagacatcggtgatcattcaagccgcactatcccaatacgtcaaatctccggctttgcc |
343 |
Q |
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|||||||||||| |||| |||||||| ||||| |||||||||| ||||| | ||| || || |||||||||||||||||| | |||||||| |
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| T |
3664891 |
agttgatttctcgacaacgattttgtcagactttgagacatcggcaatcatacgagctgcgctctcccaatacgtcaaatctgctgctttgcc |
3664983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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