View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15341_low_10 (Length: 381)
Name: NF15341_low_10
Description: NF15341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15341_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 365
Target Start/End: Complemental strand, 23971706 - 23971361
Alignment:
| Q |
20 |
aaacgcccgagcgaactcaaaattaccccgagtaaattatatcacattttttaagcacttgtccctttataaacataaaacttcttgaagtcatcactct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23971706 |
aaacgcccgagcgaactcaaaattaccccgagtaaattatatcacattttttaagcgcttgtccctttataaacataaaactacttgaagtcatcactct |
23971607 |
T |
|
| Q |
120 |
tcactaccagaatgatgacttggggggtaattgttctagacttcccaaaaagccttgctagccatgctaggacccaaactaagctattaacacctccata |
219 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23971606 |
tcactgccagaatgatgacttggggggtaattgttctagacttcccaaaaagccttgctagccatgctaggacccaaactaagctattaacgcctccata |
23971507 |
T |
|
| Q |
220 |
ccacatgaaggtgtgcttgcaattgtaaggagcctcatatatccccaaggaaactgaaacacctccttcagactttaatgtgcaaggctcgacgattaat |
319 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23971506 |
ccacatgaaggtgtgcttgcaactgtaaggagcctcatatatccccaaggaaactgaaacacctccttcacactttaatgtgcaaggctcgacgattaat |
23971407 |
T |
|
| Q |
320 |
aaattctctaaggtacgatttaatcttcccttaacctcgcattctt |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23971406 |
aaattctctaaggtacgatttaatcttcccttaacctctcattctt |
23971361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University