View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15341_low_11 (Length: 375)
Name: NF15341_low_11
Description: NF15341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15341_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 10320619 - 10320264
Alignment:
| Q |
1 |
taatattaatcatatgttgtaataaaagatgatatcattatttaacaatgatgatcatattagactaacaactttatgaggactttttgcgatcactaac |
100 |
Q |
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| T |
10320619 |
taatattaatcatatgttgtaataaaagatgatatcattatttaacaatgatgatcatattagactaacaactttatgaggactttttgcgatcactaac |
10320520 |
T |
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| Q |
101 |
tgactagttgagcttagttattaatgctttattagcatttgcatgttgtgttgtaagaggggaaaagacaagtagttggttcaaaagtagacattactga |
200 |
Q |
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| T |
10320519 |
tgactagttgagcttagttattaatgctttattagcatttgcatgttgtgttgtaagaggggagaagacaagtagttggttcaaaagtagacattactga |
10320420 |
T |
|
| Q |
201 |
aaggtaacaaagaagaaaatgcattttggttgttatgatggaagtctttagttgagttgtacttagaattaataatgctcaagcttgaaagctttcaaga |
300 |
Q |
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| T |
10320419 |
aaggtgacaaagaagaaaatgcattttggttgttatgatggaagtctttagttgagttgtacttagaat---taatgctcaagcttgaaagcttccaaga |
10320323 |
T |
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| Q |
301 |
gtaattattactagtaaatagggaagggacaagtggaatacataatttaccatactaaa |
359 |
Q |
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| T |
10320322 |
gtaattattactagtaaatagggaagggacaagtggaatacataatttaccatactaaa |
10320264 |
T |
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