View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15341_low_15 (Length: 288)
Name: NF15341_low_15
Description: NF15341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15341_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 55172589 - 55172862
Alignment:
| Q |
1 |
atttgccagctagcttgatgatgagatgagatgagattagtttataataaacaagttggttcattacactttgtgtgttgtagacgacagtcttgcaatc |
100 |
Q |
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| T |
55172589 |
atttgccagctagcttgatgatgagatgagatgagattagtttataataaacaagttggttcattacattttgtgtgttgtagacgacagtcttgcaatc |
55172688 |
T |
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| Q |
101 |
tgggaggacgctaatggaatgtgctggcaaaaagtagttagaacctctgaaactaattgtggctgcttgattagtatggttattggtgataaaagcagaa |
200 |
Q |
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| T |
55172689 |
tgggaggacgctaatggaatgtgctggcaaaaagtagttagaacctctgaaactaattgtggctgcttgattagtgtggttattggtgataaaagcagaa |
55172788 |
T |
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| Q |
201 |
catgtgcttgttccaggcttctcaaagattctaacctgcacgatgcattatatatttctcaaagttatcatgat |
274 |
Q |
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| T |
55172789 |
catgtgcttgttccaggcttctcaaagattctaacctgcacgatgcattatatatttctcaaagttatcatgat |
55172862 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 27722754 - 27722664
Alignment:
| Q |
64 |
ttacactttgtgtgttgtagacgacagtcttgcaatctgggaggacgctaatggaatgtgctggcaaaaagtagttagaacctctgaaact |
154 |
Q |
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| T |
27722754 |
ttacattttgagtgttgaagaccacagtcttgcaatcaggaagaatgctgatggaacgtggtggcaaaaaatagtctgaacctctgaaact |
27722664 |
T |
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