View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15341_low_19 (Length: 239)
Name: NF15341_low_19
Description: NF15341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15341_low_19 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 1223372 - 1223203
Alignment:
| Q |
1 |
tttcttcgtcaagttggttagtggttagcccacacaccgtaagtatgaagaaatggagatccgaagttccaacttcaacctctatatatcaatattcatg |
100 |
Q |
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|||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1223372 |
tttcttcgtcaagttggttagtggctagtccacataccgtaagtatgaagaaatggagatccgaagttccaacttcaacctctatatatcaatattcatg |
1223273 |
T |
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| Q |
101 |
aaattatcaattagaccatatttatggaatgaatcggagagtttattttattacaactaaataagctaatt |
171 |
Q |
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||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1223272 |
aaa-taccaattagacaatatttatggaatgaatcggagagtttattttattacaactaaataagctaatt |
1223203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 222
Target Start/End: Complemental strand, 1223120 - 1223089
Alignment:
| Q |
191 |
gttatattaagacagacaaaacatccatagaa |
222 |
Q |
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| T |
1223120 |
gttatattaagacagacaaaacatccatagaa |
1223089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 41960631 - 41960486
Alignment:
| Q |
5 |
ttcgtcaagttggttagtggttagcccacacaccgtaagtatgaagaaatggagatccgaagttccaacttcaacctctatatatcaatattcatgaaat |
104 |
Q |
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| T |
41960631 |
ttcgtcaagttggttagtggctagaccacacaccgtaagtatgaagaaatgaagattcgaagttccaacttcaacctctatatatcaatattcatgaaat |
41960532 |
T |
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| Q |
105 |
tatcaattagaccatatttatggaatgaatcggagagtttatttta |
150 |
Q |
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| T |
41960531 |
tactcattagaccatatttatggaatgaatcgaagagtttatttta |
41960486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 222
Target Start/End: Original strand, 41974724 - 41974755
Alignment:
| Q |
191 |
gttatattaagacagacaaaacatccatagaa |
222 |
Q |
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| T |
41974724 |
gttatattaagacagacaaaacatccatagaa |
41974755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 41959981 - 41959952
Alignment:
| Q |
142 |
tttattttattacaactaaataagctaatt |
171 |
Q |
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| T |
41959981 |
tttattttattacaactaaataagctaatt |
41959952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 222
Target Start/End: Original strand, 2032 - 2063
Alignment:
| Q |
191 |
gttatattaagacagacaaaacatccatagaa |
222 |
Q |
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| T |
2032 |
gttatattaagacagacaaaacatccatagaa |
2063 |
T |
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