View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15341_low_2 (Length: 553)
Name: NF15341_low_2
Description: NF15341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15341_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 20 - 539
Target Start/End: Original strand, 32828972 - 32829491
Alignment:
| Q |
20 |
tcttcttcggtgtgggagagacatcaagcaaaaccggggcacgcctagcccgcgagcttctcctcacccctgaatcagggttcaaatcatgacccacatt |
119 |
Q |
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| T |
32828972 |
tcttcttcggtgtgggagagacatcaagcaaaaccggggcacgcctagcccgcgagcttctcctcacccctgaatcagggttcaaatcatgacccacatt |
32829071 |
T |
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| Q |
120 |
acactcaccgtgatttctagtatactcttcctcacaaattgcatccaatttcttatgtttcttccgaacccgcgacgaggaaggtgatgatcgcatcata |
219 |
Q |
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| T |
32829072 |
acactcaccgtgatttctagtatactcttcctcacaaattgcatccaatttcttatgtttcttccgaatccgtgacgaggaaggtgatgatcgcatcata |
32829171 |
T |
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| Q |
220 |
acaaaccaaaatgtataaaaacttcaccaaacagcaatataaatcaaagtgaaaaatgataagaattaaaactttttcgctatgtagaaaactatcaaat |
319 |
Q |
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| T |
32829172 |
acaaaccaaaatgtataaaaacttcaccaaacagcaatataaatcaaagtgaaaaatgataaaaattaaaactttttcgctatgtagaaaactatcaaat |
32829271 |
T |
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| Q |
320 |
gggtattcggtgattgtgttactcgttcaattgggtattcaaattcactgtaattgagaggaaaaatggcgtggtggtttcaattgatggtaaaagatgg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32829272 |
gggtattcggtgattgtgttactcgttcaattgggtattcaaattcactgtaattgagaggaaaaatggcgtggtggtttcaattgatggtaaaaggtgg |
32829371 |
T |
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| Q |
420 |
aaaaaacgaaaccctagaaattgattgggacaagaatcattgtcggagttaaggtttgattgaaggggagttatgtgtgtttattttttgtgtgtgaaga |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32829372 |
aaaaaacgaaaccctagaaattgattgggacaagaatcattgtcggagttaaggtttgattgaagggaagttatgtgtgtttattttttgtgtgtgaaga |
32829471 |
T |
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| Q |
520 |
ttggatttctgggttctgtg |
539 |
Q |
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| T |
32829472 |
ttgcgtttctgggttctgtg |
32829491 |
T |
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