View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15341_low_21 (Length: 218)
Name: NF15341_low_21
Description: NF15341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15341_low_21 |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 230373 - 230188
Alignment:
| Q |
17 |
atatatgaattacttgtttaaaccaaccttggttgttatgttccatgctgcttagactttagattcttatattgtgcgtttgaaagttatggaatttgcg |
116 |
Q |
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| T |
230373 |
atatatgaattacttgtttaaaccaaccttggttgttatgttccatgctgcttagactttagattcttatattgtgcgtttgaaagttatggaatttgcg |
230274 |
T |
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| Q |
117 |
ctggagatacagttgcggtggggattgtgcgtttgattatagggttgaaagattagagatgaaacgacgtcgtttttgatgcggtg |
202 |
Q |
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| T |
230273 |
ctggagatacagttgcggtggggattgtgcgtttgattatagggttgaaagattagagatgaaacgacgtcgtttttgatgcggtg |
230188 |
T |
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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 37961837 - 37961764
Alignment:
| Q |
33 |
tttaaaccaaccttggttgttatgttccatgctgcttagactttagattcttatattgtgcgtttgaaagttat |
106 |
Q |
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| T |
37961837 |
tttaaaccgaccttggttgttatgtgccatgctgcttagaccagagattcttatattgtgcatttgaaagttat |
37961764 |
T |
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Target: scaffold0018 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 131124 - 131060
Alignment:
| Q |
22 |
tgaattacttgtttaaaccaaccttggttgttatgttccatgctgcttagactttagattcttat |
86 |
Q |
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| T |
131124 |
tgaagtacttgtttaatccgaccttggttgttatgtgccatgctgcttagacttgagattcttat |
131060 |
T |
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Target: scaffold0150 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 1909 - 1973
Alignment:
| Q |
22 |
tgaattacttgtttaaaccaaccttggttgttatgttccatgctgcttagactttagattcttat |
86 |
Q |
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|||| ||||||||||| || |||||||||||||||| ||||| ||||||||||| |||||||||| |
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| T |
1909 |
tgaagtacttgtttaatccgaccttggttgttatgtgccatgttgcttagacttgagattcttat |
1973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 30866671 - 30866735
Alignment:
| Q |
22 |
tgaattacttgtttaaaccaaccttggttgttatgttccatgctgcttagactttagattcttat |
86 |
Q |
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|||| |||||| |||| || |||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
30866671 |
tgaagtacttgcttaatccgaccttggttgttatgtgccatgctgcttagacttgagattcttat |
30866735 |
T |
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