View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15341_low_3 (Length: 516)
Name: NF15341_low_3
Description: NF15341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15341_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 8 - 500
Target Start/End: Complemental strand, 25381600 - 25381108
Alignment:
| Q |
8 |
catcatcactatcatcaaattgctctggactttgatacgccatgggatcctcttgatctttaacatcagcactgtcctgctcagttgttgcaacctcttc |
107 |
Q |
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| T |
25381600 |
catcatcactatcatcaaattgctctggactttgatacgccatgggatcctcctgatctttaacatcagcactgtcctgctcagttgttgcaacctgttc |
25381501 |
T |
|
| Q |
108 |
ctgcacattcagattacaagagtcttgaatatttgtaaggtcaattagataataagaaatattacaattatgtggacttagttaaagatattctaaatct |
207 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25381500 |
ctgcacattcagattacaagagtcttgaatatttgcaaggtcaattagataataagaaatattacaattatgtggatttagttaaagatattctaaatct |
25381401 |
T |
|
| Q |
208 |
ataaatgaagtggtaaaaatatggcaataaaaattgtctttactgtgctaggatatgtcttgaaagttgttacgtcatatgacatatacatgatcgtgaa |
307 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
25381400 |
ataaatgaagtggtaaagatatggcaataaaaattgtctttactgtgctaggatatgtcttgaaagtttttacgtcatatggcatatacatgatcgtgaa |
25381301 |
T |
|
| Q |
308 |
gtgttgttcccttgtataaaatggattctcaagggagcgggggaataacatctcaatcacaaatctatataccttgcttctatattagagtttaaattac |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25381300 |
gtgttgttcccttgtataaaatggattctcaagggagcgggggaataacatctcaatcacaaatctatataccttgcttctatattagagtttaaattac |
25381201 |
T |
|
| Q |
408 |
atggaagtaaatttaagtaacgaaggactgaaccaagtaaaagtgctaattttggttgaaagatcattatattccaaattttaactcacaaac |
500 |
Q |
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| T |
25381200 |
atggaagtaaatttaagtaacgaaggactgaaccaagtaaaagtgctaattttggttgaaagatcattatgttccaaattttaactcacaaac |
25381108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 38338571 - 38338718
Alignment:
| Q |
8 |
catcatcactatcatcaaattgctctggactttgatacgccatgggatcctcttgatctttaacatcagcactgt---cctgctcagttgttgcaacctc |
104 |
Q |
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||||||||||||||||| ||||||| ||| |||||| |||||||||| || |||||| |||| | | ||| ||||||||| ||||||||||| |
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| T |
38338571 |
catcatcactatcatcagattgctccggaatttgattttccatgggatcttcccgatcttcaacaacttctatgtggtcctgctcagctgttgcaacctt |
38338670 |
T |
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| Q |
105 |
ttcctgcacattcagattacaagagtcttgaatatttgtaaggtcaatta |
154 |
Q |
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| T |
38338671 |
ttcctg--cattcagataacaagagttttgaaaattagcaaggtcaatta |
38338718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 38330246 - 38330295
Alignment:
| Q |
82 |
tcctgctcagttgttgcaacctcttcctgcacattcagattacaagagtctt |
133 |
Q |
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| T |
38330246 |
tcctgctcagctgttgcaacctcttcctgcac--tcagataacaagagtctt |
38330295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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