View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15341_low_8 (Length: 414)
Name: NF15341_low_8
Description: NF15341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15341_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 3 - 396
Target Start/End: Complemental strand, 8421202 - 8420809
Alignment:
| Q |
3 |
cttggttgtctctaaaactttgttgtttacagatagtaaagaaaggaccacatgccaaagagtataatcacaaatttatctttttcttttctggtctaac |
102 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
8421202 |
cttggttgtctctaaaactttgttgtttgcagatagtaaagaaaggaccacatgccaaagagtataatcacaaatttatgtttttcttttcaggtctaac |
8421103 |
T |
|
| Q |
103 |
aagaggagtttgacgtgagttatgtagagagggtatgttacacttttcttgctcaattgttattgggaatggctttagatgtatttgaaatagcaaggct |
202 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
8421102 |
aagaggagtttgacgtgagttatgtagagagggtaggttacacttttcttgctcaattgtgattggcaatggctttagatgtatttgaaatagcaaggct |
8421003 |
T |
|
| Q |
203 |
aaaattgaagaatgaaactcatgaactcaagtagaataaattgaaaacaaagtggtgattaattatattatggcactatacagatcttttagaggaggtg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8421002 |
aaaattgaagaatgaaactcatgaactcaagtagaataaattgaaaacaaagtggtgattaattatattatggcactatacagatcttttagaggaggtg |
8420903 |
T |
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| Q |
303 |
agcgtgtatgttgttttgttttgtgcagcagagtgtaggaaatgttctcagtctcttcctaattgtgtgttatcaaattattataggtagatac |
396 |
Q |
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| T |
8420902 |
agcgtgtatgttgttttgttttgtgcagcagagagtaggaaatgttctcagtctcttcctaattgtgtgttatcaaattattataggtagatac |
8420809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 49170910 - 49171313
Alignment:
| Q |
1 |
ggcttggttgtctctaaaactttgttgtttacagatagtaaagaaaggaccacatgccaaagagtataatcacaaatttatctttt-tcttttctggtct |
99 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
49170910 |
ggcttggttgtctctaaaactttgttgtttgcagatagtaaagaaaggaccacatgccaaagagtataatcacaaatttatgttttttcttttctggtct |
49171009 |
T |
|
| Q |
100 |
aacaagaggagtttgacgtgagttatgtagagagggtatgttacacttttcttgctcaattgttattgggaatggctttagatgtatttgaaatagcaag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
49171010 |
aacaagaggagtttgacgtgagttatgtagagagggtaggttacacttttcttgctcaattgtgattggcaatggctttagatgtatttgaaatagcaag |
49171109 |
T |
|
| Q |
200 |
gctaaaattgaagaatgaaactcatgaactcaagtagaataaattgaaaacaaagtggtgattaattatattatggcactatacagatcttttagaggag |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49171110 |
gctaaaattgaagaatgaaactcatgaactcaagtagaataaattgaaaacaaagtggtgattaattatattatggcactataaagatcttttagaggag |
49171209 |
T |
|
| Q |
300 |
gtgagcgtgtatgttgttttgttttgtgcagcagagtgtaggaaatgttctcagtctcttcctaattgtgtgttatc-------aaattattataggtag |
392 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49171210 |
gtgagcgtgtatgttgttttgttttgtgcagcagagagtaggaaatgttctcagtctcttcctaattgtgtgttatccctaagaaaattattataggtag |
49171309 |
T |
|
| Q |
393 |
atac |
396 |
Q |
| |
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|||| |
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|
| T |
49171310 |
atac |
49171313 |
T |
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