View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_high_1 (Length: 782)
Name: NF15342_high_1
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 616; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 19 - 775
Target Start/End: Original strand, 43960843 - 43961586
Alignment:
| Q |
19 |
acgttttttgggtactattctcaccaatatttttaatcaaactactatggtacaattgtcgggtgaaagatgcatgtttagattttacaagtgaaaagaa |
118 |
Q |
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| T |
43960843 |
acgttttttgggtactattctcaccaacatttttaatcaaactactatggtacaattgtcgggtgaaagatgcatgtttagattttacaagtgaaaagaa |
43960942 |
T |
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| Q |
119 |
tgtgtatgaagatatttataggtgagagttttggatnnnnnnnnnnnnnnnnnnnncaagtagcaaaacacctgtgagaacatctatactcttgcaattg |
218 |
Q |
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| T |
43960943 |
tgtgtatgaagatatttataggtgagagttttggattatatata------------caagtagcaaaacacctacgagaacatctatactcttgcaattg |
43961030 |
T |
|
| Q |
219 |
ttgaatcaagagtagacgattttctttgatgaatttattctcctccggtctctgacaatgacgacgggtttgagacctctgtttggtgcttatggagctc |
318 |
Q |
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| T |
43961031 |
ttgaatcaagagtagacgattttctttgatgaatttattctcctccggtctctgacaatgacgacgggtttgagacctctgtttggtgcttatggagctc |
43961130 |
T |
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| Q |
319 |
tcatgcttactactcttctttgcgctctcttaatcgatggtcccccctttcgcaaacannnnnnn-actccgtaatctctctttctcttacaacgttaat |
417 |
Q |
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| T |
43961131 |
tcatgcttactactcttctttgcgctctcttaatcgatggtcccccctttcgcaaacattttttttactccgtaatctctct--ctcttacaacgttaat |
43961228 |
T |
|
| Q |
418 |
tgaatgtcaactacatgatcaagacacttgnnnnnnnaacagaaaacaatgtagtacttagtattatttttcatccgactcaggtggatggtagcaactt |
517 |
Q |
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| T |
43961229 |
tgaatgtcaactacatgatcaagacacttgtttttttaacagaaaacaatgtagtacttagtattatttttcatccgactcaggtggatggtagcaactt |
43961328 |
T |
|
| Q |
518 |
tgactgatttttatatcaacgttatcattttaagtgtaagttaaccaactacttaactctctataatcttcttcactatttttgcgatttttgtttctga |
617 |
Q |
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| T |
43961329 |
tgactgatttttatatcaacgttatcattttaagtgtaagttaaccaactacttaactctctataatcttcttcactatttttgtgatttttgtttctga |
43961428 |
T |
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| Q |
618 |
catatggttgtttatcacattaggcatgggttgctcacaaggaagctaattggatcagcttaattctatggataatttcatttatcttccttggaaggta |
717 |
Q |
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| T |
43961429 |
catatggttgtttatcacattaggcatgggttgctcacaaggaagctaattggatcagcttaattctatggataatttcatttatcttccttggaaggta |
43961528 |
T |
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| Q |
718 |
ttattttttctcatcaagaaacttctttcagcaggatgatgtatatttcttgcctttg |
775 |
Q |
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| T |
43961529 |
ttattttttctcatcaagaaacttctttcagcaggatgatgtatatttcttgcctttg |
43961586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 654 - 724
Target Start/End: Original strand, 43954670 - 43954740
Alignment:
| Q |
654 |
acaaggaagctaattggatcagcttaattctatggataatttcatttatcttccttggaaggtattatttt |
724 |
Q |
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| T |
43954670 |
acaaggaagctaattggatcagctcgattctatggataattttacttatcggccttggaaggtattgtttt |
43954740 |
T |
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