View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_high_16 (Length: 386)
Name: NF15342_high_16
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 372
Target Start/End: Complemental strand, 54735088 - 54734712
Alignment:
| Q |
6 |
agaagaatacgattttagctgaggattgagtaacnnnnnnnttaagaacttnnnnnnncgaatttccagaaccgattttgggaagaatcaaccagaactt |
105 |
Q |
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| T |
54735088 |
agaagaatacgatttcagctgaggattgagtaacaaaaaa-ttaagaacttaaaaaaacgaatttccagaaccgattttgagaagaatcaaccggaactt |
54734990 |
T |
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| Q |
106 |
tttccacatgttttctggaaatcaatgattctgagatcgattcctgcaattcagaacacggttatgtgaattattctctcgtaacccactgacccataaa |
205 |
Q |
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| T |
54734989 |
tttgcatatgttttatgggaatcaatgattccgagatcgattcctgcaattcagaacacggttatgtgaactattctctcgtaacccactgaccca-aaa |
54734891 |
T |
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| Q |
206 |
acgttgacatatcc-----------atagtgaacaattaagggaataatcatatgaaaagatcaagagatcaatcagtaattgattcttggcaaagacgt |
294 |
Q |
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| T |
54734890 |
acgttgacatatccataatcctcaaatagtgaacaattaagggaataaacatatgaaaagatcaagagagcaatcaataattgatgtttggcaaagacgt |
54734791 |
T |
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| Q |
295 |
cttactgtttgtttgagttttcctggcgaagg-nnnnnnnnnnggaaaaaggcgggggtgaacaagtgaatggtgattg |
372 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
54734790 |
cttactgtttgtttgagttttcctggcgaaggtttttttttttggaaaaaggtgggggtgaacaagtgaatggtgattg |
54734712 |
T |
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