View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_high_18 (Length: 348)
Name: NF15342_high_18
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 53036360 - 53036136
Alignment:
| Q |
17 |
tttgttgcatgaaagagtcggaattttagcttgaaattaacccatgcaatgtgtacatgatacatgcagatttcatttatgaattaatttgacgttgttc |
116 |
Q |
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| T |
53036360 |
tttgttgcatgaaagagtcggaattttagcttgaaattaacccatgcaatgtgtacatgatacatgcagatttcatttatgaattaatttgacgttgttc |
53036261 |
T |
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| Q |
117 |
tgattggattattcaattgaagttggcttctatatttgttcctcacacgtaattcacttttctatgctacaggaaacaacatcattttcggccttaaact |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
53036260 |
tgattggattattcaattgaagttggcttctatatttgttcctcacacgtaattcacttttctatgctaaaggaaacaacatcattttcggccttaaact |
53036161 |
T |
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| Q |
217 |
acttgatcaaagaaaaaatatattt |
241 |
Q |
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||||||||||||||||||||||||| |
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| T |
53036160 |
acttgatcaaagaaaaaatatattt |
53036136 |
T |
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