View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_high_19 (Length: 335)
Name: NF15342_high_19
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 31215679 - 31215389
Alignment:
| Q |
12 |
atgaacagagccatttattccttaagttcacaggtgaagcaatattcacaccctctaaataagaaaagaatatatgcatgcatgatcaattgaggaggaa |
111 |
Q |
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| T |
31215679 |
atgaacagagccatttattccttaagtccacaagtgaagcaatattcacaccctctaaataagaaaagaatatatgcatgcatgatcaattgaggaggaa |
31215580 |
T |
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| Q |
112 |
gctgaaacgatgagccgaaacatgaacaattttacgcctttgctgcggcttcggagaacagattctagagcctatgatgctcctcctcacacttccaata |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31215579 |
gctgaaacgatgagccgaaacatgaacaattttacgcctttgccgcggctccggagaacagattctagagcctatgatgctcctcctcacacttccaata |
31215480 |
T |
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| Q |
212 |
atcctcatgaattcaatgaagttcctgtgtttttcagatctatcactcttctagagccaatgtaagtctatcacattcttgatttaataac |
302 |
Q |
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| T |
31215479 |
atcctcatgaattcaatgaagttcctgtgtttttcagatctatcactcttctagagccaatgtaagtctatcacattcttgatttaataac |
31215389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 54 - 302
Target Start/End: Complemental strand, 31202355 - 31202106
Alignment:
| Q |
54 |
tattcacaccctctaaataagaaaagaatatatgcatgcatgatcaattgaggaggaagctgaaacgatgagccgaaacatgaacaattttacgcctttg |
153 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31202355 |
tatttacaccctctaaataagaaaagaatatatgcatgcatgaacaattgaggaggaaggtgaaacgatgagccgaaacatgaacaattttacgcctttg |
31202256 |
T |
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| Q |
154 |
ctgcggcttcggagaacagattctagagcctatgatgctcctcctcacacttccaataatcctcatgaattcaatgaagttcctgtgtttttcagatct- |
252 |
Q |
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| T |
31202255 |
ccagggcttcggagaacagattctagagcctatggtgctcctcatcacacttccaataatcctcatgaattcaatgaagtacctgtgttttacagatctc |
31202156 |
T |
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| Q |
253 |
atcactcttctagagccaatgtaagtctatcacattcttgatttaataac |
302 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31202155 |
atcattcttctagggccaatgtaagtctatcacattcttgatttaataac |
31202106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 45 - 302
Target Start/End: Complemental strand, 13606136 - 13605878
Alignment:
| Q |
45 |
gtgaagcaatattcacaccctctaaataagaaaagaatatatgcatgcatgatcaattgaggaggaagctgaaacgatgagccgaaacatgaacaatttt |
144 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13606136 |
gtgaagcaatatttacaccctctaaataagaaaagaatatatgcatgcatgttcaattgaggaggaaggtgaaacgatgagccgaaacatgaacaatttt |
13606037 |
T |
|
| Q |
145 |
acgcctttgctgcggcttcggagaacagattctagagcctatgatgctcctcctcacacttccaataatcctcatgaattcaatgaagttcctgtgtttt |
244 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||| |||| |||||||||| |
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| T |
13606036 |
acgccttagccagggcttcggagaacagattctagagcctatgatgctccttatcaaacttacaataatcctcatgaattcaattaagtacctgtgtttt |
13605937 |
T |
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| Q |
245 |
tcagatct-atcactcttctagagccaatgtaagtctatcacattcttgatttaataac |
302 |
Q |
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| ||||| ||||||| |||| || |||||||||| |||||||||||||||||||||| |
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| T |
13605936 |
acggatctcatcactccactagggctaatgtaagtcaatcacattcttgatttaataac |
13605878 |
T |
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