View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15342_high_31 (Length: 278)
Name: NF15342_high_31
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_high_31 |
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| [»] scaffold1526 (1 HSPs) |
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| [»] scaffold0016 (2 HSPs) |
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| [»] scaffold0642 (2 HSPs) |
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| [»] scaffold0105 (2 HSPs) |
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| [»] scaffold0345 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 3379213 - 3378973
Alignment:
| Q |
1 |
tgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnn------tcaaggaaaacaatccataacttgaaatgaattgattgacatg |
94 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3379213 |
tgacatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaatcaaggaaaacaatccataacttgaaatgaattaattgacatg |
3379114 |
T |
|
| Q |
95 |
gctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaattgagttttgtaaaca-tnnnnnnnnnnnnnnggtc |
193 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |
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|
| T |
3379113 |
gctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaattgagttttgtaaacattaaaaagaaaaaaaaggtg |
3379014 |
T |
|
| Q |
194 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatc |
234 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
3379013 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatc |
3378973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1526 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold1526
Description:
Target: scaffold1526; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 299 - 540
Alignment:
| Q |
1 |
tgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnn------tcaaggaaaacaatccataacttgaaatgaattgattgacatg |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
299 |
tgacatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaatcaaggaaaacaatccataacttgaaatgaattaattgacatg |
398 |
T |
|
| Q |
95 |
gctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaattgagttttgtaaacatnnnnnnnnnnnnnn--ggt |
192 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
399 |
gctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaattgagttttgtaaacataaaaaagaaaaaaaaaggt |
498 |
T |
|
| Q |
193 |
ctgcatgaagttgcaaagtccaaattttgttgaagggtaatc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
499 |
gcgcatgaagttgcaaagtccaaattttgttgaagggtaatc |
540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 52983 - 53162
Alignment:
| Q |
1 |
tgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnn-----tcaaggaaaacaatccataacttgaaatgaattgattgacatgg |
95 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52983 |
tgacatttacatataatccattaaaatacacattggatgtttgaagaaaaaaaaaatcaaggaaaacaatccataacttgaaatgaattaattgacatgg |
53082 |
T |
|
| Q |
96 |
ctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaattgagttttgtaaacat |
175 |
Q |
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|
|||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53083 |
ctcttgcatactaacaatgcccttcacagtacatataacttaatcgttacacaaccgaggaaattgagttttgtaaacat |
53162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 53182 - 53226
Alignment:
| Q |
190 |
ggtctgcatgaagttgcaaagtccaaattttgttgaagggtaatc |
234 |
Q |
| |
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||| ||||||||| |||||||||||||||||| |||||||||||| |
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| T |
53182 |
ggtgtgcatgaaggtgcaaagtccaaattttgctgaagggtaatc |
53226 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 44496481 - 44496300
Alignment:
| Q |
1 |
tgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnn-------tcaaggaaaacaatccataacttgaaatgaattgattgacat |
93 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||| |
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| T |
44496481 |
tgacatttatatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaattcaaggaaaacaatccataaattgaaatgaattaattgacat |
44496382 |
T |
|
| Q |
94 |
ggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaattgagttttgtaaacat |
175 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44496381 |
ggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaattgagttttgtaaacat |
44496300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 44496278 - 44496239
Alignment:
| Q |
195 |
gcatgaagttgcaaagtccaaattttgttgaagggtaatc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44496278 |
gcatgaagttgcaaagtccaaattttgttgaagggtaatc |
44496239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 4996 - 4832
Alignment:
| Q |
1 |
tgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnn-------tcaaggaaaacaatccataacttgaaatgaattgattgacat |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
4996 |
tgacatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaaatcaaggaaaacaatccataacatgaaatgaattaattgacat |
4897 |
T |
|
| Q |
94 |
ggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaa |
158 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4896 |
ggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaa |
4832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 4821 - 4781
Alignment:
| Q |
194 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatc |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4821 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatc |
4781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 24072 - 24236
Alignment:
| Q |
1 |
tgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnn-------tcaaggaaaacaatccataacttgaaatgaattgattgacat |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
24072 |
tgacatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaaatcaaggaaaacaatccataacatgaaatgaattaattgacat |
24171 |
T |
|
| Q |
94 |
ggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaa |
158 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24172 |
ggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaa |
24236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 24248 - 24288
Alignment:
| Q |
194 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatc |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24248 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatc |
24288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 14909 - 14745
Alignment:
| Q |
1 |
tgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnnt-------caaggaaaacaatccataacttgaaatgaattgattgacat |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
14909 |
tgacatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaatacaaggaaaacaatccataacatgaaatgaattaattgacat |
14810 |
T |
|
| Q |
94 |
ggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaa |
158 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14809 |
ggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaa |
14745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 14733 - 14693
Alignment:
| Q |
194 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatc |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14733 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatc |
14693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 28335400 - 28335452
Alignment:
| Q |
68 |
ataacttgaaatgaattgattgacatggctcttgcatactaacaatgcccttca |
121 |
Q |
| |
|
||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
28335400 |
ataacttaaaatgaatt-attggcatggctctcgcatactaacaatgcccttca |
28335452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 44787355 - 44787407
Alignment:
| Q |
68 |
ataacttgaaatgaattgattgacatggctcttgcatactaacaatgcccttca |
121 |
Q |
| |
|
||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
44787355 |
ataacttaaaatgaatt-attggcatggctctcgcatactaacaatgcccttca |
44787407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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