View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_high_6 (Length: 552)
Name: NF15342_high_6
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_high_6 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 498; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 11 - 534
Target Start/End: Original strand, 51772741 - 51773261
Alignment:
| Q |
11 |
cacagaagtacataaacatcgtcacagtggacaattttgatttctggtttatgggtgtctttaattatcataaaacattcaactatctcgagaaagcaat |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51772741 |
cacaaaagtacataaacatcgtcacagtggacaattttgatttctggtttatgggtgtctttaattatcataaaacattcaactatctcgagaaagcaat |
51772840 |
T |
|
| Q |
111 |
ttctcaagcttagatgaatatcaaaagtccaccatatgtgcataatataaatagttggactggaatgaagcttcatgttgcgaggacaaacattataaga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51772841 |
ttctcaagcttagatgaatatcaaaagtccaccatatgtgcataatataaatagttggactggaatgaagcttcatgttgcgaggacaaacattataaga |
51772940 |
T |
|
| Q |
211 |
cagaacttaaatgagatgataaatattatagttgcagatattgggcactgtctttgataagaaggacttcatcgacagtattgatcatcctcaagcacaa |
310 |
Q |
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| T |
51772941 |
ctgaacttaaatgagatgataaatattatagttgcagatattgggcactgtctttgataagaaggacttcatcgacagtattgatcatcctcaagcacaa |
51773040 |
T |
|
| Q |
311 |
aacatcttgctgaattttacctttccacacaagattgaccaattatgacagatgcacatgattcatttcattcatatatatcggctcgaatgcagaaatg |
410 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51773041 |
aaca---tgctgaattttacctttccacacaagattgaccaattatgacagatgcacatgattcatttcattcatatatatcggctcgaatgcagaaatg |
51773137 |
T |
|
| Q |
411 |
cctgtcaacatattgttgataaagttgtggataaacgatatcatttgacgcgtgctttgttgcatgaaaggaggttatttttatggtagaaaacaagatg |
510 |
Q |
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| T |
51773138 |
cctgtcaacatattgttgataaagttgtggataaacgagatcatttgacgcgtgctttgttgcatgaaaggaggttatttttatggtagaaaacaagatg |
51773237 |
T |
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| Q |
511 |
gaaggagaagtaaatagaaagaat |
534 |
Q |
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| T |
51773238 |
gaaggagaagtaaatagaaagaat |
51773261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 51804346 - 51804454
Alignment:
| Q |
11 |
cacagaagtacataaacatcgtcacagtggacaattttgatttctggtttatgggtgtctttaattatcataaaacattcaactatctcgagaaagcaat |
110 |
Q |
| |
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|||| |||||||||||||| |||||| |||||||||||||||||||| ||||||||||| | || ||||| ||||| ||||| ||| ||||| | ||||| |
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| T |
51804346 |
cacaaaagtacataaacatagtcacaatggacaattttgatttctggcttatgggtgtcctaaaatatcagaaaactttcaaatatatcgagcaggcaat |
51804445 |
T |
|
| Q |
111 |
ttctcaagc |
119 |
Q |
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||||||||| |
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| T |
51804446 |
ttctcaagc |
51804454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 303 - 514
Target Start/End: Original strand, 51790262 - 51790470
Alignment:
| Q |
303 |
aagcacaaaacatcttgctgaattttacctttccacacaagattgaccaattatga-cagatgcacatgattcatttcattcatatatatcggctcgaat |
401 |
Q |
| |
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||||||||| |||||||| | |||| ||||||||| |||||||| ||||||| | ||||||||||||||||||||||||| |||||||| || || |
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| T |
51790262 |
aagcacaaaccatcttgcgggatttagtctttccacaaaagattgatcaattataaacagatgcacatgattcatttcattc----atatcggcacggat |
51790357 |
T |
|
| Q |
402 |
gcagaaatgcctgtcaacatattgttgataaagttgtggataaacgatatcatttgacgcgtgctttgttgcatgaaaggaggttatttttatggtagaa |
501 |
Q |
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||||| ||| || ||||||||||||||||||||| || ||| | || |||||||| | |||| ||||| ||||| ||| || || |||| |||||| |
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| T |
51790358 |
gcagacatggctttcaacatattgttgataaagtagtagatgcaagaaatcatttggcttgtgcattgttagatgaagggatattgttgttatagtagaa |
51790457 |
T |
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| Q |
502 |
aacaagatggaag |
514 |
Q |
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| T |
51790458 |
accaagatggaag |
51790470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 51780579 - 51780684
Alignment:
| Q |
13 |
cagaagtacataaacatcgtcacagtggacaattttgatttctggtttatgggtgtctttaattatcataaaacattcaactatctcgagaaagcaattt |
112 |
Q |
| |
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|||||||||||||| || || |||||||| || || ||||||||| ||||||||||||| || ||||| ||||| ||||| ||||||||| | ||||||| |
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| T |
51780579 |
cagaagtacataaatatagttacagtggataacttcgatttctggcttatgggtgtcttaaaatatcagaaaactttcaaatatctcgagcaggcaattt |
51780678 |
T |
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| Q |
113 |
ctcaag |
118 |
Q |
| |
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| T |
51780679 |
cacaag |
51780684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 51808295 - 51808401
Alignment:
| Q |
11 |
cacagaagtacataaacatcgtcacagtggacaattttgatttctggtttatgggtgtctttaattatcataaaacattcaactatctcgagaaagcaat |
110 |
Q |
| |
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|||| ||||||||||| || || |||| ||| ||||||||||||| |||||||||| | || ||||| ||||| ||||| ||||||||| | ||||| |
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| T |
51808295 |
cacaaaagtacataaagatagttacagaagacggttttgatttctggcttatgggtgttctaaaatatcagaaaactttcaaatatctcgagcaggcaat |
51808394 |
T |
|
| Q |
111 |
ttctcaa |
117 |
Q |
| |
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||||||| |
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| T |
51808395 |
ttctcaa |
51808401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 365 - 442
Target Start/End: Original strand, 51780739 - 51780810
Alignment:
| Q |
365 |
cacatgattcatttcattcatatatatcggctcgaatgcagaaatgcctgtcaacatattgttgataaagttgtggat |
442 |
Q |
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||||||||||||||||||||||| | ||| | ||||||| || ||||||||||||||||||||||||||||||| |
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| T |
51780739 |
cacatgattcatttcattcatat----cagcttggatgcaga--tggctgtcaacatattgttgataaagttgtggat |
51780810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 51768140 - 51768214
Alignment:
| Q |
57 |
gtttatgggtgtctttaattatcataaaacattcaactatctcgagaaagcaatttctcaagcttagatgaatat |
131 |
Q |
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| T |
51768140 |
gtttttgggtgtcttcaaatatcagaaaactttcaaatatatcgaaaaggcgatttctcaagtttagatgaatat |
51768214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 7223 - 7327
Alignment:
| Q |
13 |
cagaagtacataaacatcgtcacagtggacaattttgatttctggtttatgggtgtctttaattatcataaaacattcaactatctcgagaaagcaattt |
112 |
Q |
| |
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|||||||||||||| || || |||||||| || || ||||||||| ||||||||||||| || ||||| ||||| ||||| ||||||||| | ||||||| |
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| T |
7223 |
cagaagtacataaatatagttacagtggataacttcgatttctggcttatgggtgtcttaaaatatcagaaaactttcaaatatctcgagcaggcaattt |
7322 |
T |
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| Q |
113 |
ctcaa |
117 |
Q |
| |
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||||| |
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| T |
7323 |
ctcaa |
7327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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