View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_1 (Length: 814)
Name: NF15342_low_1
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 111 - 580
Target Start/End: Complemental strand, 18161527 - 18161058
Alignment:
| Q |
111 |
atcatctttctgatcaacaggcatgtgatacctacaaataggacaagacccatgaatccctaaccacttctcaatacactttccatgaaacctatgctta |
210 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18161527 |
atcatctttctcatcaacaggcatgtgatacctacaaacaggacaagacccatgaatccccaaccacttctcaatacactttccatgaaacctatgctta |
18161428 |
T |
|
| Q |
211 |
caaggcatctccttcacaaccccaccaacctcaaattcctctaaacaaacaacacactctcctccatcaccttcttcaatctcaaccttctccatagctt |
310 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18161427 |
caaggcatctccttcacaaccccaccaacctcaaactcctccaaacaaacaacacactctcctccatcaccttcttcaatctcaatcttctccatagctt |
18161328 |
T |
|
| Q |
311 |
ctatagactcctttgttgccggtggttgaccagtctttgtggcactcacaaggttgttgaaaagctcttcaaggtttgaagctccatcgatcacaaccat |
410 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18161327 |
ctatagactcctttgttgccggtggttgaccagtctttgtggcactcccaaggttgttgaaaagctcttcaaggcttgaagctccatcgatcacaaccat |
18161228 |
T |
|
| Q |
411 |
accctgtgtgaatgtgttcaccaagatgattctgtcagcggtggaatcttccgtggcatgggaatcggaactatgatctgggttggtgttgtttgaagat |
510 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18161227 |
accctgtgtgaatgtgttcaccaagatgattctgtcagtggtggaatcttccgtggcatgggaatcggaactatgatctgggtctgtgttgtttgaagat |
18161128 |
T |
|
| Q |
511 |
gaatgtgaaaggcttaacattctgatcgttctttcgaacagagaagaaatttcagcttctaaagccatcg |
580 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
18161127 |
gaatgtgaaaggcttaacattctgatcattctttcgaacagagaagaaatttctgcttctaaagccatcg |
18161058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 111 - 461
Target Start/End: Complemental strand, 18157813 - 18157463
Alignment:
| Q |
111 |
atcatctttctgatcaacaggcatgtgatacctacaaataggacaagacccatgaatccctaaccacttctcaatacactttccatgaaacctatgctta |
210 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18157813 |
atcatcttcctgatcaacaggcatctgatacctacaaacaggacaagacccatgaatccctaaccacttctcaatacactttccatgaaacctatgctta |
18157714 |
T |
|
| Q |
211 |
caaggcatctccttcacaaccccaccaacctcaaattcctctaaacaaacaacacactctcctccatcaccttcttcaatctcaaccttctccatagctt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| ||| |||||||||| |
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| T |
18157713 |
caaggcatctccttcacaaccccaccaacctcaaattcctccaaacaaacaacacactcaccaccatcaccttcttcaatctcaatcttgtccatagctt |
18157614 |
T |
|
| Q |
311 |
ctatagactcctttgttgccggtggttgaccagtctttgtggcactcacaaggttgttgaaaagctcttcaaggtttgaagctccatcgatcacaaccat |
410 |
Q |
| |
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||||||||||||| || ||||||||||||||| ||||||| | ||| |||||||||| || || ||||||| | |||||||||||||||| ||| || |
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| T |
18157613 |
ctatagactccttcgtagccggtggttgaccattctttgtagaacttccaaggttgttaaagagttcttcaatgcttgaagctccatcgattacagtgat |
18157514 |
T |
|
| Q |
411 |
accctgtgtgaatgtgttcaccaagatgattctgtcagcggtggaatcttc |
461 |
Q |
| |
|
|| |||||| || | |||||| || |||||||| | || ||||||||||| |
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| T |
18157513 |
actctgtgtcaaagggttcacaaaaatgattctttgaggagtggaatcttc |
18157463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 710 - 778
Target Start/End: Complemental strand, 18160943 - 18160875
Alignment:
| Q |
710 |
gttgtcgaaggatctggaacatggtatttggtgcatgtgagattgtagtgtcatttatttcctaatcac |
778 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
18160943 |
gttgtcgaaggatctggaacatggtattaggtgcatgtgagattgtggtgtcatttatttcctaatcac |
18160875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18157932 - 18157880
Alignment:
| Q |
1 |
tgatcttgatttctcctactcctattgatagaaaaactaacccaaacttcacc |
53 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18157932 |
tgatcttgatttctcctactcctattaatagaaaaactaacccaaacttcacc |
18157880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 18150669 - 18150619
Alignment:
| Q |
1 |
tgatcttgatttctcctactcctattgatagaaaaactaacccaaacttca |
51 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
18150669 |
tgatcttgatttctcctactcctattaatagaaaaactaacccaaacttca |
18150619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18161646 - 18161591
Alignment:
| Q |
1 |
tgatcttgatttctcct---actcctattgatagaaaaactaacccaaacttcacc |
53 |
Q |
| |
|
||||||||||||||||| |||||| || |||||||||||||||||||||||||| |
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|
| T |
18161646 |
tgatcttgatttctcctcctactcctgttaatagaaaaactaacccaaacttcacc |
18161591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 4e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 52896860 - 52896741
Alignment:
| Q |
111 |
atcatctttctgatcaacaggcatgtgatacctacaaataggacaagacccatgaatccctaaccacttctcaatacactttccatgaaacctatgctta |
210 |
Q |
| |
|
||||||||||| ||||||| | || ||||||||||||| | |||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||| |
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|
| T |
52896860 |
atcatctttctcatcaacatgtatctgatacctacaaacaaaacaagacctatgaatccccaaccacttctcaatacacttcccatgaaacctatgctta |
52896761 |
T |
|
| Q |
211 |
caaggcatctccttcacaac |
230 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
52896760 |
caaggcatctccttcacaac |
52896741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 346 - 460
Target Start/End: Complemental strand, 52896681 - 52896567
Alignment:
| Q |
346 |
tttgtggcactcacaaggttgttgaaaagctcttcaaggtttgaagctccatcgatcacaaccataccctgtgtgaatgtgttcaccaagatgattctgt |
445 |
Q |
| |
|
||||| ||||| ||||||||||||| || || |||| ||||||||||||| |||||||||||||| |||||||| | | |||||||||||||||| | |
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|
| T |
52896681 |
tttgtagcacttccaaggttgttgaagagttcgacaagccttgaagctccatcaatcacaaccataccatgtgtgaaaggggtcaccaagatgattcttt |
52896582 |
T |
|
| Q |
446 |
cagcggtggaatctt |
460 |
Q |
| |
|
|| ||||||||||| |
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|
| T |
52896581 |
gaggggtggaatctt |
52896567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 52896745 - 52896680
Alignment:
| Q |
259 |
acaacacactctcctccatcaccttcttcaatctcaaccttctccatagcttctatagactccttt |
324 |
Q |
| |
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||||||| |||||| |||||| ||||||||||||||||||||| |||| ||||||||||||||||| |
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|
| T |
52896745 |
acaacaccctctccgccatcatcttcttcaatctcaaccttcttcatatcttctatagactccttt |
52896680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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