View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15342_low_11 (Length: 520)

Name: NF15342_low_11
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15342_low_11
NF15342_low_11
[»] chr3 (9 HSPs)
chr3 (8-504)||(2833257-2833759)
chr3 (371-492)||(4778032-4778153)
chr3 (369-490)||(41640822-41640943)
chr3 (369-490)||(1045348-1045468)
chr3 (374-474)||(34213151-34213251)
chr3 (371-474)||(26982022-26982125)
chr3 (421-488)||(24748338-24748405)
chr3 (380-418)||(1762039-1762077)
chr3 (446-490)||(36597090-36597134)
[»] chr2 (4 HSPs)
chr2 (369-490)||(10994430-10994551)
chr2 (372-498)||(43411515-43411641)
chr2 (370-462)||(29682700-29682792)
chr2 (371-465)||(41074563-41074656)
[»] chr1 (10 HSPs)
chr1 (369-490)||(51871201-51871322)
chr1 (375-466)||(25410572-25410663)
chr1 (369-490)||(15274345-15274466)
chr1 (371-474)||(52372670-52372773)
chr1 (372-462)||(13297595-13297685)
chr1 (371-468)||(44503952-44504049)
chr1 (372-466)||(3227649-3227743)
chr1 (371-490)||(40799651-40799770)
chr1 (371-457)||(21926619-21926704)
chr1 (372-438)||(9644372-9644438)
[»] chr7 (8 HSPs)
chr7 (369-490)||(33743470-33743591)
chr7 (367-474)||(33888612-33888719)
chr7 (372-461)||(12258376-12258465)
chr7 (371-474)||(46028431-46028534)
chr7 (371-474)||(23176893-23176996)
chr7 (371-432)||(26557857-26557918)
chr7 (386-466)||(40188186-40188266)
chr7 (434-490)||(26556449-26556505)
[»] chr8 (10 HSPs)
chr8 (371-474)||(42032733-42032836)
chr8 (369-490)||(2074778-2074899)
chr8 (371-487)||(41927020-41927136)
chr8 (369-443)||(36650452-36650526)
chr8 (380-468)||(32073929-32074017)
chr8 (371-473)||(24604837-24604939)
chr8 (386-474)||(34152010-34152098)
chr8 (372-468)||(42241226-42241322)
chr8 (369-459)||(26000097-26000187)
chr8 (393-462)||(8172247-8172316)
[»] chr6 (3 HSPs)
chr6 (369-473)||(9755657-9755761)
chr6 (386-459)||(52009-52082)
chr6 (390-468)||(9557366-9557444)
[»] chr4 (9 HSPs)
chr4 (369-453)||(48309635-48309719)
chr4 (371-495)||(23012311-23012435)
chr4 (386-474)||(50655066-50655154)
chr4 (371-468)||(24065097-24065194)
chr4 (371-468)||(30251395-30251492)
chr4 (386-490)||(45068100-45068204)
chr4 (386-468)||(4866794-4866876)
chr4 (380-468)||(44616658-44616746)
chr4 (390-474)||(19469667-19469750)
[»] chr5 (6 HSPs)
chr5 (371-490)||(41650525-41650643)
chr5 (371-490)||(27639424-27639543)
chr5 (375-468)||(33861926-33862018)
chr5 (372-488)||(3465280-3465396)
chr5 (367-408)||(33672060-33672101)
chr5 (412-467)||(33672896-33672946)
[»] scaffold0329 (1 HSPs)
scaffold0329 (371-474)||(18417-18520)
[»] scaffold0042 (1 HSPs)
scaffold0042 (372-432)||(83251-83311)


Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 8 - 504
Target Start/End: Complemental strand, 2833759 - 2833257
Alignment:
Q  8 ccaagaatatggattttaatgacttataaaatgagatttattagggatgtgtgtgtagtaaagtcattaaaaacgttgtaaatgtatttcaagccaactc 107  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2833759 ccaagaaaatggattttaatgacttataaaatgagatttattagggatgtgtgtgtagcaaagtcattaaaaacgttgtaaatgtatttcaagccaactc 2833660  T
Q  108 gattttgtcttaaatccagtccaacatgaggcataaattatcgggttaagctagggatgggttagggacttcaaaatcatccaatcaaactttaggacat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2833659 gattttgtcttaaatccagtccaacatgaggcataaattatcgggttaagctagggatgggttagggacttcaaaatcatccaatcaaa-tttaggacat 2833561  T
Q  208 ggctagggttggttattatccgtcccttgcgcacccctagatatcgtgttcgaaacttcaaaaatatagtt---tnnnnnnngttgtaaatacatatttt 304  Q
    ||||||||||||||||||||||||||||||||| | ||||||| ||| |||||||||||||||| ||||||           | ||||||||||||||||    
T  2833560 ggctagggttggttattatccgtcccttgcgcatctctagataccgtattcgaaacttcaaaaaaatagttaaaaaaaaaaaggtgtaaatacatatttt 2833461  T
Q  305 cttctcacattagggaaaaatgcgagaagaaaataaagttcttcatctttttgtgaggcaatgtcagtggtggacagagtgaaactcttagcttggaagt 404  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  2833460 cttctcgcattagggaaaaatgcgagaagaaaataaagttcttcatctttttgtgaggcaatgtcagtggtagatagagtgaaactcttagcttggaagt 2833361  T
Q  405 ggttcatggctaagtgccct----gctagttcctgctctctctatgagtgggaggtgcagcccgtcctatgttgaaatcagtagggtttttgcggtgggt 500  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2833360 ggttcatggctaagtgccctgctagctagttcctgctctctctatgagtgggaggtgcagcccgtcctatgttggaatcagtagggtttttgcggtgggt 2833261  T
Q  501 tttt 504  Q
    ||||    
T  2833260 tttt 2833257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 371 - 492
Target Start/End: Original strand, 4778032 - 4778153
Alignment:
Q  371 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctat 470  Q
    |||||||| ||||| |||||||||| |||||||||||||  ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  4778032 gtggtggatagagttaaactcttagtttggaagtggttccaggctaggtgccctgctagtccctgctctctctatgagtgggaggtgcagcccgtcctgt 4778131  T
Q  471 gttgaaatcagtagggtttttg 492  Q
    |||  |||| ||||||||||||    
T  4778132 gtttgaatcggtagggtttttg 4778153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 369 - 490
Target Start/End: Original strand, 41640822 - 41640943
Alignment:
Q  369 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 468  Q
    |||||||||||||||| ||||||||| |||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41640822 cagtggtggacagagttaaactcttaacttggaagtggtttcgggctaagtgccctgctagttcctgctctccctatgagtgggaggtgcagcccgtcct 41640921  T
Q  469 atgttgaaatcagtagggtttt 490  Q
     ||||   | ||||||||||||    
T  41640922 gtgtttggaccagtagggtttt 41640943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 369 - 490
Target Start/End: Complemental strand, 1045468 - 1045348
Alignment:
Q  369 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 468  Q
    |||||||||| || || ||||||| |||||||||||||||| |||||||||||||||||||||| || |||||||||||| |||||||||||| ||||||    
T  1045468 cagtggtggatagggttaaactctcagcttggaagtggttcctggctaagtgccctgctagttcttgttctctctatgag-gggaggtgcagctcgtcct 1045370  T
Q  469 atgttgaaatcagtagggtttt 490  Q
     ||||  |||| ||||||||||    
T  1045369 gtgtttgaatcggtagggtttt 1045348  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 374 - 474
Target Start/End: Original strand, 34213151 - 34213251
Alignment:
Q  374 gtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctatgtt 473  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||    | ||||| ||||||||||||||||| ||||    
T  34213151 gtggatagagtgaaactcttagcttggaagtggttcatggctaagtgccatgctagttcatgcacttatcacgagtgtgaggtgcagcccgtcctgtgtt 34213250  T
Q  474 g 474  Q
    |    
T  34213251 g 34213251  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 371 - 474
Target Start/End: Complemental strand, 26982125 - 26982022
Alignment:
Q  371 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgc-tctctctatgagtgggaggtgcagcccgtccta 469  Q
    |||||||| ||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||  || || ||||||||||||| |||||||| |||    
T  26982125 gtggtggatagagtaaaactcttagcttggaagtggttcttggctaagtgccctgcaagttcctgcacctatc-atgagtgggaggttcagcccgttcta 26982027  T
Q  470 tgttg 474  Q
     ||||    
T  26982026 cgttg 26982022  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 488
Target Start/End: Complemental strand, 24748405 - 24748338
Alignment:
Q  421 ccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctatgttgaaatcagtagggtt 488  Q
    |||||||||||| || ||||||| |||||||||||||||| ||||||  ||||| ||||| |||||||    
T  24748405 ccctgctagttcatgttctctctttgagtgggaggtgcagtccgtccagtgttggaatcaatagggtt 24748338  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 418
Target Start/End: Complemental strand, 1762077 - 1762039
Alignment:
Q  380 agagtgaaactcttagcttggaagtggttcatggctaag 418  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  1762077 agagcgaaactcttagcttggaagtggttcatggctaag 1762039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 490
Target Start/End: Original strand, 36597090 - 36597134
Alignment:
Q  446 gagtgggaggtgcagcccgtcctatgttgaaatcagtagggtttt 490  Q
    ||||| ||||||||||||||||| ||||| |||||||||||||||    
T  36597090 gagtgagaggtgcagcccgtcctgtgttggaatcagtagggtttt 36597134  T

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Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 369 - 490
Target Start/End: Original strand, 10994430 - 10994551
Alignment:
Q  369 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 468  Q
    |||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |    
T  10994430 cagtggtggatagagttaaactcttagcttggaagtggttcctggctaagtgccctgctagttcccgttctctctatgagtgggaggtgcagcccgtctt 10994529  T
Q  469 atgttgaaatcagtagggtttt 490  Q
     ||||  |||| ||||||||||    
T  10994530 gtgtttgaatcggtagggtttt 10994551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 372 - 498
Target Start/End: Original strand, 43411515 - 43411641
Alignment:
Q  372 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctatg 471  Q
    ||||||| |||| ||||||||||||||| ||||| ||| |||||||||| |||||||| |||||| ||    ||||||||||||||||||||||||| ||    
T  43411515 tggtggatagagcgaaactcttagcttgaaagtgtttcctggctaagtgtcctgctagctcctgcacttatcatgagtgggaggtgcagcccgtcctttg 43411614  T
Q  472 ttgaaatcagtagggtttttgcggtgg 498  Q
    |||| |   |||||||||||| |||||    
T  43411615 ttgacagtggtagggtttttgtggtgg 43411641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 370 - 462
Target Start/End: Original strand, 29682700 - 29682792
Alignment:
Q  370 agtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcc 462  Q
    ||||||||| ||||| ||||||||||||| ||||||||||  |||||||  |||||||| | |||| ||||||| ||||||||||||||||||    
T  29682700 agtggtggatagagttaaactcttagcttagaagtggttccaggctaagcaccctgctaatccctgttctctctttgagtgggaggtgcagcc 29682792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 465
Target Start/End: Complemental strand, 41074656 - 41074563
Alignment:
Q  371 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgt 465  Q
    |||||||||| || ||||||||||||||| ||||||||| ||||||||||||||||||| |||| | || |  |||||||| |||||||||||||    
T  41074656 gtggtggacaaagcgaaactcttagcttgaaagtggttcctggctaagtgccctgctag-tccttcacttttcatgagtggaaggtgcagcccgt 41074563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 369 - 490
Target Start/End: Original strand, 51871201 - 51871322
Alignment:
Q  369 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 468  Q
    |||||||||| ||| | |||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51871201 cagtggtggatagaattaaactcttagcttggaagtggttcctgactaagtgccctgctagttcctgttctctctatgagtgggaggtgcagcccgtcct 51871300  T
Q  469 atgttgaaatcagtagggtttt 490  Q
     ||||  |||| ||||||||||    
T  51871301 gtgtttgaatcggtagggtttt 51871322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 375 - 466
Target Start/End: Complemental strand, 25410663 - 25410572
Alignment:
Q  375 tggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtc 466  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||| ||||||||||||||||||||||||||    
T  25410663 tggatagagtgaaactcttagcttggaagtggttcctggctaagtaccttgctagttcctgctctttctatgagtgggaggtgcagcccgtc 25410572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 369 - 490
Target Start/End: Original strand, 15274345 - 15274466
Alignment:
Q  369 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 468  Q
    |||||||||||||||||||||| |||||||| ||||| ||| | |||||||| ||||||||||| || |||||||||||||||||||||||| | |||||    
T  15274345 cagtggtggacagagtgaaacttttagcttgtaagtgattcctagctaagtgtcctgctagttcatgttctctctatgagtgggaggtgcagtctgtcct 15274444  T
Q  469 atgttgaaatcagtagggtttt 490  Q
     ||||| |||| ||||||||||    
T  15274445 gtgttggaatcggtagggtttt 15274466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 371 - 474
Target Start/End: Original strand, 52372670 - 52372773
Alignment:
Q  371 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctat 470  Q
    |||||||| |||| |||||||||||||| |||||||||| |||||| |||||||||||||||||||||| | ||||||||||||||||| ||| |||| |    
T  52372670 gtggtggatagagcgaaactcttagcttagaagtggttcctggctaggtgccctgctagttcctgctctttttatgagtgggaggtgcaacccatccttt 52372769  T
Q  471 gttg 474  Q
    ||||    
T  52372770 gttg 52372773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 372 - 462
Target Start/End: Original strand, 13297595 - 13297685
Alignment:
Q  372 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcc 462  Q
    ||||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| ||    |||||||||||||||||||    
T  13297595 tggtggatagagtgaaactcttagcttgaaattggttcatggctaagtgtcctgctagttcctgcacttatcatgagtgggaggtgcagcc 13297685  T

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Target: chr1; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 371 - 468
Target Start/End: Complemental strand, 44504049 - 44503952
Alignment:
Q  371 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 468  Q
    |||||||| | |||||| |||||||||||||||||||||||| ||||||| | || ||||||||||||| |  |||||||||||||||||| ||||||    
T  44504049 gtggtggataaagtgaagctcttagcttggaagtggttcatgactaagtgtcgtggtagttcctgctcttttcatgagtgggaggtgcagctcgtcct 44503952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 372 - 466
Target Start/End: Complemental strand, 3227743 - 3227649
Alignment:
Q  372 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtc 466  Q
    ||||||||| ||| |||||||||||||| ||||| ||| ||| ||||||||||||||||  ||| ||||||||||||||||| ||||| ||||||    
T  3227743 tggtggacatagttaaactcttagcttgaaagtgattcctggttaagtgccctgctagtctctgttctctctatgagtgggaagtgcaacccgtc 3227649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 371 - 490
Target Start/End: Original strand, 40799651 - 40799770
Alignment:
Q  371 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctat 470  Q
    |||||||| |||||||||||||| ||||| |||| |||| | |||||||||  ||||||||| |||||| |  |||||||||||||||||| |||||| |    
T  40799651 gtggtggatagagtgaaactcttggcttgaaagttgttcctagctaagtgcattgctagttcttgctcttttcatgagtgggaggtgcagctcgtccttt 40799750  T
Q  471 gttgaaatcagtagggtttt 490  Q
    | ||  ||| ||||||||||    
T  40799751 gctggcatcggtagggtttt 40799770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 457
Target Start/End: Original strand, 21926619 - 21926704
Alignment:
Q  371 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtg 457  Q
    |||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||| || |||    ||||||||||||||    
T  21926619 gtggtggatagagtgaaactcttagcctggaagtggttc-tggctaagtgccctgctagttcatgttcttatcatgagtgggaggtg 21926704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 438
Target Start/End: Original strand, 9644372 - 9644438
Alignment:
Q  372 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctc 438  Q
    ||||||| |||| ||||||||| | ||||||||||||| | |||||||| ||| ||||||| |||||    
T  9644372 tggtggatagagcgaaactcttgggttggaagtggttcctagctaagtgtcctactagttcttgctc 9644438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 369 - 490
Target Start/End: Original strand, 33743470 - 33743591
Alignment:
Q  369 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 468  Q
    |||||||||||||||| ||| |||||||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||    
T  33743470 cagtggtggacagagttaaaatcttagcttgaaagtggttcttggctaagtgccctgctagtccctgttctctctatgagtgggaggtgcaacccgtcct 33743569  T
Q  469 atgttgaaatcagtagggtttt 490  Q
     ||||  | || ||||||||||    
T  33743570 gtgtttgagtcggtagggtttt 33743591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 367 - 474
Target Start/End: Original strand, 33888612 - 33888719
Alignment:
Q  367 gtcagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtc 466  Q
    |||||||||||| |||||| ||||||||| ||||||||||||   ||||||||||||||||||||| |  ||||||||||||||| ||||||| ||||||    
T  33888612 gtcagtggtggatagagtggaactcttagattggaagtggtttcgggctaagtgccctgctagttcatattctctctatgagtggaaggtgcaacccgtc 33888711  T
Q  467 ctatgttg 474  Q
    ||||||||    
T  33888712 ctatgttg 33888719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 372 - 461
Target Start/End: Original strand, 12258376 - 12258465
Alignment:
Q  372 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagc 461  Q
    ||||||| ||||| |||||||||||||| ||||||||| |||||||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  12258376 tggtggatagagttaaactcttagcttgaaagtggttcctggctaagtgtcctgccagtccctgctctctctatgagtgggaggtgcagc 12258465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 371 - 474
Target Start/End: Complemental strand, 46028534 - 46028431
Alignment:
Q  371 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctat 470  Q
    |||||||| |||| ||||||||||||||||||||||||| |||||||||| |||||||||| || |||  | ||| ||||||||||||||||||| || |    
T  46028534 gtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgtcctgctagtttctactccttttataagtgggaggtgcagcccgttcttt 46028435  T
Q  471 gttg 474  Q
    ||||    
T  46028434 gttg 46028431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 371 - 474
Target Start/End: Complemental strand, 23176996 - 23176893
Alignment:
Q  371 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctat 470  Q
    |||||| | |||||||||||||||||||||||| ||||| | || ||||| | ||||||||| ||| ||    |||||| ||||||||||||||||||||    
T  23176996 gtggtgtatagagtgaaactcttagcttggaagcggttccttgccaagtgtcatgctagttcatgcacttatcatgagttggaggtgcagcccgtcctat 23176897  T
Q  471 gttg 474  Q
    ||||    
T  23176896 gttg 23176893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 432
Target Start/End: Complemental strand, 26557918 - 26557857
Alignment:
Q  371 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttc 432  Q
    |||||||||||||| ||||| ||||||||| ||||| || ||||||||||||||||||||||    
T  26557918 gtggtggacagagttaaacttttagcttggtagtggctcctggctaagtgccctgctagttc 26557857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 466
Target Start/End: Complemental strand, 40188266 - 40188186
Alignment:
Q  386 aaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtc 466  Q
    |||||| ||||||||||||||||| || ||||||||||||||||||| ||| ||    |||||| ||||||||||| ||||    
T  40188266 aaactcatagcttggaagtggttcttgcctaagtgccctgctagttcttgcacttatcatgagtaggaggtgcagctcgtc 40188186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 490
Target Start/End: Complemental strand, 26556505 - 26556449
Alignment:
Q  434 tgctctctctatgagtgggaggtgcagcccgtcctatgttgaaatcagtagggtttt 490  Q
    ||||| |||||||||||||||||||||||| |||| || |  |||||||||||||||    
T  26556505 tgctccctctatgagtgggaggtgcagcccatcctgtgcttgaatcagtagggtttt 26556449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 371 - 474
Target Start/End: Original strand, 42032733 - 42032836
Alignment:
Q  371 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctat 470  Q
    |||||| | |||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||  | ||||||||||||||||| |||||||| |    
T  42032733 gtggtgaatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctacttcctgctccttttatgagtgggaggtgcaacccgtccttt 42032832  T
Q  471 gttg 474  Q
    ||||    
T  42032833 gttg 42032836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 369 - 490
Target Start/End: Complemental strand, 2074899 - 2074778
Alignment:
Q  369 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 468  Q
    |||||||||| | ||| |||||||||| || ||||| ||||  |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  2074899 cagtggtggatatagttaaactcttagttttgaagttgttccaggctaagtgccctgctagttcctgttctctctatgagtgggaggtgcaacccgtcct 2074800  T
Q  469 atgttgaaatcagtagggtttt 490  Q
     ||||   ||| ||||||||||    
T  2074799 gtgtttgtatcggtagggtttt 2074778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 371 - 487
Target Start/End: Original strand, 41927020 - 41927136
Alignment:
Q  371 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctat 470  Q
    |||||||| |||| ||| ||||||||||||||||||||| |||||||||||| ||| | |||||||| | |||||||||||||| |||| ||| |||| |    
T  41927020 gtggtggatagagcgaatctcttagcttggaagtggttcctggctaagtgccgtgcaaattcctgctttttctatgagtgggagatgcaccccttcctgt 41927119  T
Q  471 gttgaaatcagtagggt 487  Q
    ||||  | |||||||||    
T  41927120 gttggcagcagtagggt 41927136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 369 - 443
Target Start/End: Complemental strand, 36650526 - 36650452
Alignment:
Q  369 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctct 443  Q
    |||||||||||||||| ||||||||||||||| ||||||||  ||||||||| | ||||||||||||||||||||    
T  36650526 cagtggtggacagagttaaactcttagcttgggagtggttccgggctaagtgtcttgctagttcctgctctctct 36650452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 380 - 468
Target Start/End: Complemental strand, 32074017 - 32073929
Alignment:
Q  380 agagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 468  Q
    |||||||||||||||| ||||||||| ||  |||||||||| ||| |||||||||||||  | ||||||||||||| ||||||||||||    
T  32074017 agagtgaaactcttagtttggaagtgatttctggctaagtgtcctactagttcctgctccttttatgagtgggaggcgcagcccgtcct 32073929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 473
Target Start/End: Original strand, 24604837 - 24604939
Alignment:
Q  371 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctat 470  Q
    |||||||| |||| ||||||||||| ||| ||||||||| |||||||||| ||||||||||  | ||||    |||||||||||||||||||| ||||||    
T  24604837 gtggtggatagagcgaaactcttagattgaaagtggttcttggctaagtggcctgctagttttttctcttatcatgagtgggaggtgcagcccatcctat 24604936  T
Q  471 gtt 473  Q
    |||    
T  24604937 gtt 24604939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 386 - 474
Target Start/End: Complemental strand, 34152098 - 34152010
Alignment:
Q  386 aaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctatgttg 474  Q
    |||||||||||||||||||||||| |||||||| |||||   ||||||||| || |  |||||||||||||||| ||| |||| |||||    
T  34152098 aaactcttagcttggaagtggttcctggctaagcgccctagcagttcctgcacttttcatgagtgggaggtgcaacccatcctttgttg 34152010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 372 - 468
Target Start/End: Complemental strand, 42241322 - 42241226
Alignment:
Q  372 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 468  Q
    ||||||| | || ||||||||||||||||||||||||| |||| ||| || || ||||||||||| ||  |  ||||||||||||||| ||||||||    
T  42241322 tggtggataaagcgaaactcttagcttggaagtggttcctggcgaagcgctctactagttcctgcacttaccttgagtgggaggtgcaacccgtcct 42241226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 459
Target Start/End: Original strand, 26000097 - 26000187
Alignment:
Q  369 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgca 459  Q
    ||||||||||  |||| ||||| |||||||| |||||||||  | |||||| || || ||||  ||| |||||||||||||||||||||||    
T  26000097 cagtggtggatggagttaaacttttagcttgaaagtggttctagactaagttccatgttagtctctgttctctctatgagtgggaggtgca 26000187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 462
Target Start/End: Complemental strand, 8172316 - 8172247
Alignment:
Q  393 tagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcc 462  Q
    |||||||||| |||||| |||| ||||| | |||||| || |||||  ||||||||||||| ||||||||    
T  8172316 tagcttggaaatggttcgtggcgaagtgtcatgctagctcttgctccttctatgagtgggaagtgcagcc 8172247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 369 - 473
Target Start/End: Complemental strand, 9755761 - 9755657
Alignment:
Q  369 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 468  Q
    |||||||||||| |||||||||||||| ||||||||||||   ||||||||||||||||||||| || |||||| |||| || |||||||||||||||||    
T  9755761 cagtggtggacaaagtgaaactcttagtttggaagtggtttcgggctaagtgccctgctagttcatgttctctccatgaatgagaggtgcagcccgtcct 9755662  T
Q  469 atgtt 473  Q
     ||||    
T  9755661 gtgtt 9755657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 386 - 459
Target Start/End: Original strand, 52009 - 52082
Alignment:
Q  386 aaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgca 459  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||| ||| || | |||||||||||||||||    
T  52009 aaactcttagcttggaagtggttcctggctaagtgtcttgctagttcttgcactttatatgagtgggaggtgca 52082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 390 - 468
Target Start/End: Complemental strand, 9557444 - 9557366
Alignment:
Q  390 tcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 468  Q
    |||||||||||||||| ||| || ||||||| |||||||| |||||| ||    |||||||||||||||||||||||||    
T  9557444 tcttagcttggaagtgattcctgactaagtgtcctgctagctcctgcacttatcatgagtgggaggtgcagcccgtcct 9557366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 369 - 453
Target Start/End: Complemental strand, 48309719 - 48309635
Alignment:
Q  369 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtggga 453  Q
    |||||||||| ||||||||||||||||||||||||| ||||  ||||||||  |||||||||||||| |||||||||||||||||    
T  48309719 cagtggtggatagagtgaaactcttagcttggaagtcgttccgggctaagtttcctgctagttcctgttctctctatgagtggga 48309635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 371 - 495
Target Start/End: Complemental strand, 23012435 - 23012311
Alignment:
Q  371 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctat 470  Q
    |||||||| |||||||||||||||| |||||| |||||||||||||||||   |||||||| |||| ||    |||| ||||||||||||| |||||| |    
T  23012435 gtggtggatagagtgaaactcttagtttggaattggttcatggctaagtgttgtgctagtttctgcacttatcatgaatgggaggtgcagcacgtcctgt 23012336  T
Q  471 gttgaaatcagtagggtttttgcgg 495  Q
    ||||| ||| |||||||||| ||||    
T  23012335 gttgacatcggtagggttttggcgg 23012311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 386 - 474
Target Start/End: Complemental strand, 50655154 - 50655066
Alignment:
Q  386 aaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctatgttg 474  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||| |||| | || |||||||||||||||| || ||||| |||||    
T  50655154 aaactcttagcttggaagtggttcctggctaagtgtcctgctagttcttgctttttccatgagtgggaggtgcaacctgtcctttgttg 50655066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 371 - 468
Target Start/End: Complemental strand, 24065194 - 24065097
Alignment:
Q  371 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 468  Q
    |||||||| ||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| | |   ||||| |||||||| || ||||||||    
T  24065194 gtggtggatagagtgaaactcttaacctggaagtggttcatggctaagtaccctgctagttcctgttgttattatgaatgggaggtacaacccgtcct 24065097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 371 - 468
Target Start/End: Complemental strand, 30251492 - 30251395
Alignment:
Q  371 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 468  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||||||||||||  ||||| |||||| |  |||||||||||||| |||| |||||    
T  30251492 gtggtggatagagtgaaactcttggcttgaaagtggttcctggctaagtgccctggaagttcttgctctgttcatgagtgggaggtgtagccggtcct 30251395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 386 - 490
Target Start/End: Complemental strand, 45068204 - 45068100
Alignment:
Q  386 aaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctatgttgaaatcagtagg 485  Q
    |||||||||||||||||||||||| |||||||||||||||  ||||||| | ||    ||||| |||||||||| |||||||| |||||  |||||||||    
T  45068204 aaactcttagcttggaagtggttcctggctaagtgccctggcagttcctacacttatcatgagggggaggtgcaacccgtcctttgttggtatcagtagg 45068105  T
Q  486 gtttt 490  Q
    |||||    
T  45068104 gtttt 45068100  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 386 - 468
Target Start/End: Original strand, 4866794 - 4866876
Alignment:
Q  386 aaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 468  Q
    |||||||||||||||||||||||| |||||||||||| ||||||| | ||| ||    |||||||||||||||| || |||||    
T  4866794 aaactcttagcttggaagtggttcctggctaagtgccttgctagtccttgcacttatcatgagtgggaggtgcaacctgtcct 4866876  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 468
Target Start/End: Complemental strand, 44616746 - 44616658
Alignment:
Q  380 agagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 468  Q
    |||| ||| ||||||||||| |||||| ||||||||||| ||| ||||| ||| ||| ||  | |||||||||||||||| ||||||||    
T  44616746 agagagaagctcttagcttgtaagtggctcatggctaagggccttgctaattcttgcacttacgatgagtgggaggtgcaacccgtcct 44616658  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 474
Target Start/End: Original strand, 19469667 - 19469750
Alignment:
Q  390 tcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctatgttg 474  Q
    |||||||||||||||||||| | | ||||||  |||||||||||||| ||    |||||||||||||| |||| ||||| |||||    
T  19469667 tcttagcttggaagtggttcctagttaagtg-tctgctagttcctgcacttatcatgagtgggaggtgtagcctgtcctttgttg 19469750  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 371 - 490
Target Start/End: Original strand, 41650525 - 41650643
Alignment:
Q  371 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctat 470  Q
    |||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||  | |||||| || |||||| |||||||| |    
T  41650525 gtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgctctgctagctcctgcacttaccatgagt-ggtggtgcaacccgtccttt 41650623  T
Q  471 gttgaaatcagtagggtttt 490  Q
    ||||  | ||||||||||||    
T  41650624 gttggcagcagtagggtttt 41650643  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 371 - 490
Target Start/End: Complemental strand, 27639543 - 27639424
Alignment:
Q  371 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctat 470  Q
    |||||||| ||||  ||| |||||||||||||||||||||||||||| || ||||||||||| ||| ||    |||||| ||||||||| |||||||| |    
T  27639543 gtggtggatagagcaaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtaggaggtgcaacccgtccttt 27639444  T
Q  471 gttgaaatcagtagggtttt 490  Q
      |||||| |||||||||||    
T  27639443 actgaaattagtagggtttt 27639424  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 375 - 468
Target Start/End: Original strand, 33861926 - 33862018
Alignment:
Q  375 tggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 468  Q
    |||| ||||||||||| || |||||||||||| ||  |||||||||||||| ||||||||||||| |  |||||||||||||| ||||||||||    
T  33861926 tggatagagtgaaact-ttggcttggaagtggctcccggctaagtgccctggtagttcctgctcttttcatgagtgggaggtgtagcccgtcct 33862018  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 372 - 488
Target Start/End: Complemental strand, 3465396 - 3465280
Alignment:
Q  372 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctatg 471  Q
    ||||||| |||| ||||||||||||||||||||| ||| |||| ||| |  || ||||||||||| ||  | |||||||||||||||| ||| |||| ||    
T  3465396 tggtggatagagcgaaactcttagcttggaagtgtttcttggcgaagcgttctactagttcctgcacttaccatgagtgggaggtgcaacccatcctgtg 3465297  T
Q  472 ttgaaatcagtagggtt 488  Q
     ||  ||||||||||||    
T  3465296 ctggcatcagtagggtt 3465280  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 367 - 408
Target Start/End: Original strand, 33672060 - 33672101
Alignment:
Q  367 gtcagtggtggacagagtgaaactcttagcttggaagtggtt 408  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  33672060 gtcagtggtggacaaagttaaactcttagcttggaagtggtt 33672101  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 467
Target Start/End: Original strand, 33672896 - 33672946
Alignment:
Q  412 ggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcc 467  Q
    |||||||||||||||||||||||     |||||||||||||||||||| |||||||    
T  33672896 ggctaagtgccctgctagttcct-----ctctatgagtgggaggtgcaacccgtcc 33672946  T

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Target: scaffold0329 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 474
Target Start/End: Complemental strand, 18520 - 18417
Alignment:
Q  371 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctat 470  Q
    |||||||| |||| ||||||| ||| ||| ||||| |||  ||||||||||||||||||||||||| ||    |||||||||||||||| ||||| || |    
T  18520 gtggtggatagagcgaaactcatagtttgaaagtgattctgggctaagtgccctgctagttcctgcacttatcatgagtgggaggtgcaacccgttctgt 18421  T
Q  471 gttg 474  Q
    ||||    
T  18420 gttg 18417  T

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Target: scaffold0042 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 432
Target Start/End: Complemental strand, 83311 - 83251
Alignment:
Q  372 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttc 432  Q
    ||||||| | ||| ||||||||||||||||||||||||||| | ||||| |||||||||||    
T  83311 tggtggataaagtcaaactcttagcttggaagtggttcatgccgaagtgtcctgctagttc 83251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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