View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_12 (Length: 431)
Name: NF15342_low_12
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Complemental strand, 3958500 - 3958103
Alignment:
| Q |
19 |
cctatagccttaattttaatcaagaaggaaaaatcaagaaacatatgtttgttataaaacagattaatttccattcacttgcgatcagttgcatatacag |
118 |
Q |
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| T |
3958500 |
cctatagccttaattttaatcaagaaggaaaaatcaagaaacatttgtttgttataaaacagattaatttccattcatttgcaatcagttgcatatacag |
3958401 |
T |
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| Q |
119 |
aattacacattgtgagctgagtttcatacatctacttttacaatcctcttatgttattcttctttaactgacttggatattggaaatgccgcaaccactg |
218 |
Q |
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| T |
3958400 |
aattacgcattgtgagctgagtttcatacatctacttttacaatcctcttatgttattcttctttaactgacttggatattggagatgctgcaaccactg |
3958301 |
T |
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| Q |
219 |
catgaaactgcagaacaaaaaacaaatatatttcaatggatattatttaggtctatgtataataatcgtaattataaaaagtaatttttataactcgaat |
318 |
Q |
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| T |
3958300 |
catgaaactgcagaacaaaaaacaaatatatttcaatggatattatttaggtctatgtataataatcgtaattataaaaagtaatttttataactcgaat |
3958201 |
T |
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| Q |
319 |
gttaagcgtgtctacttacatcaaactatagacttgtgtgtaaatcaaattcttcatcttcagctgcatgatgtaatgttgaataactcgacttctat |
416 |
Q |
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| T |
3958200 |
gttaagcatgtctacttacatcaaactatagacttctgtgtaaatcaaattcttcatcttcagttgcatgatgtaatgttgaataactcgactgctat |
3958103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 380
Target Start/End: Original strand, 3998438 - 3998531
Alignment:
| Q |
287 |
taattataaaaagtaatttttataactcgaatgttaagcgtgtctacttacatcaaactatagacttgtgtgtaaatcaaattcttcatcttca |
380 |
Q |
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| T |
3998438 |
taatgatagaaagtaatgttggtaactcaactgttaactgtgtctacttgcatcatactatagagttgtgtctaaatcaaattcttcatcttca |
3998531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 3958089 - 3958037
Alignment:
| Q |
330 |
ctacttacatcaaactatagacttgtgtgtaaatcaaattcttcatcttcagc |
382 |
Q |
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| T |
3958089 |
ctacttacatcaaactatggacttgtgtctaaatcaacttcttcatcttcagc |
3958037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 381
Target Start/End: Original strand, 4022623 - 4022678
Alignment:
| Q |
326 |
gtgtctacttacatcaaactatagacttgtgtgtaaatcaaattcttcatcttcag |
381 |
Q |
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| T |
4022623 |
gtgtctacttacatcaatctatagacttgtgactaaatcaacttcttcatcttcag |
4022678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 4006977 - 4007032
Alignment:
| Q |
41 |
agaaggaaaaatcaagaaacatatgtttgttataaaac-agattaatttccattca |
95 |
Q |
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| T |
4006977 |
agaaggaaaaatcaagaaatatttttttgttataacacaagattaatttccattca |
4007032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 3984475 - 3984560
Alignment:
| Q |
292 |
ataaaaagtaatttttataactcgaatgttaagcgtgtctacttacatcaaactatagacttgtgtgtaaatcaaattcttcatcttca |
380 |
Q |
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| T |
3984475 |
ataagaagtaatgttgataactcgaatgttaatcgtggttacttacatcagactaca---ttgtgcctaaatcaacttcttcatcttca |
3984560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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