View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_13 (Length: 427)
Name: NF15342_low_13
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 15450864 - 15450646
Alignment:
| Q |
15 |
cataggccttttcgcattccaccttaaaaatcagatacaccctcctagaattttgagccaggtcaatgaattcataacaacgaccactccatcaaccaga |
114 |
Q |
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| T |
15450864 |
cataggccttttcgaattccaccttaaaaatcatatacaccctcctagaatttcgagccaggtcaatgaattcagaacaacgaccactccatcaaccaga |
15450765 |
T |
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| Q |
115 |
tacctccccttaattaaagtttactgattggtttaaataattttatccataattcctaccatccaacaacattgtcacgaacttatgaagagatccaaga |
214 |
Q |
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| T |
15450764 |
tacctccccctaattaaagtttactgattggtttaaataattttatccataattcctaacatcaaacaacattgtcacgaacttatgaagagatccaaga |
15450665 |
T |
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| Q |
215 |
agggaactaggatggaatt |
233 |
Q |
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| T |
15450664 |
agggaactaggatggaatt |
15450646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 230 - 408
Target Start/End: Complemental strand, 15450276 - 15450098
Alignment:
| Q |
230 |
aattttaacttctctttaagaatgtgagccatccaccttgtagtttacaaggaggcctaattgagaatgaccatattatgtaatcctttatcagccatcc |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15450276 |
aattttaacttctctttaagaatgtgagccatccaccttgtagtttacaaggaggcctaattgagaatgaccatattatgtaatcctttctcagccatcc |
15450177 |
T |
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| Q |
330 |
gaaagttattgaatataaacaaccttaggccccgatgttgggaagagtagtgaatgaccaagggataatcgtccgagac |
408 |
Q |
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| T |
15450176 |
ggaagatattgaatataaacaaccttaggccccgatgttaggaagagtagcgaatgaccaagggacaatcgtccgagac |
15450098 |
T |
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