View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_14 (Length: 421)
Name: NF15342_low_14
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 41697553 - 41697954
Alignment:
| Q |
1 |
ccaatcccaccagctacaatttcatcttcagctggtggtactgaatttagagtgaatgcctaatgatcataaagaaaattttgttcttaatacttacttt |
100 |
Q |
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| T |
41697553 |
ccaatcccaccagctacaatttcatcttcagctggtggtactgaatttagagtgaatgcctaatgatcataaagcaaattttgttcttaatacttacttt |
41697652 |
T |
|
| Q |
101 |
aatattaagagatcatttgaaataatagggaatttttaccaatccattgctattaaatgcaaatgcagagcttggaagctccccagcatatgtataagca |
200 |
Q |
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| T |
41697653 |
aatattaagagatcatttgaaataatagggaatttttaccaatccattgctattaaatgcaaatgcagagcttggaagctccccagcatatgtataagca |
41697752 |
T |
|
| Q |
201 |
acaaagaatagcccatttggcaatcttcctttaattaagtagctgcataacataaagaccaaaaaaggaaagaatacttataaagcaattttatttgaat |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41697753 |
acaaagaatagcccatttggcaatattcctttaattaagtagctgcataacataaagaccaaaaaaggaaagaatacttataaagcaattttatttgaat |
41697852 |
T |
|
| Q |
301 |
tcgagaacaaaatatgaatatgaatacaaacgcttacgtgtgaccaacaagaacaacatttgcatcctcattgtgtgctgcaattgccatagattcatca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41697853 |
tcgagaacaaaatatgaatatgaatacaaacgcttacgtgtgaccaacaagaacaacatttgcatcctcattgtgtgctgcaattgccatagattcatca |
41697952 |
T |
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| Q |
401 |
ac |
402 |
Q |
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|| |
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| T |
41697953 |
ac |
41697954 |
T |
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