View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_18 (Length: 409)
Name: NF15342_low_18
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 39577586 - 39577986
Alignment:
| Q |
1 |
cataagatgagtgtgagagggttgttctaaaatgattgtacaaatataatttcttgcgagcaagagccagaaattcgaacaaccaagaaattcttgcatg |
100 |
Q |
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| T |
39577586 |
cataagatgagtgtgagagggttgttctaaaatgattgtacaaatataatttcttgcgagcaagagcgagaaattcgaacgaccaagaaattcttgcatg |
39577685 |
T |
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| Q |
101 |
tgcgatgaagttactgtattctggtcacactactgtttggataagagattcagataggaagctttgtgttgcttaagaaaaggtaaacattaagttccat |
200 |
Q |
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| T |
39577686 |
tgcgatgaagttactgtattctggtcatactactgtttggataagagattcagataggaagctttgtgttgcttaagaaaaggtaaacattaagttccat |
39577785 |
T |
|
| Q |
201 |
tttatttattgcatcacagcgtgatatatgaaagtgttatttcttcttaattgaaccaatgccttcaattgccttcaattttctaatattaatcataaga |
300 |
Q |
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| T |
39577786 |
tttatttattgcatcacagcgtgatatatgaaagtgttatttcttcttaattgaaccaatgccttcaattgccttcaattttctaatattaatcataaga |
39577885 |
T |
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| Q |
301 |
tgcttgtg-----------tgcatagatcaacaatctatcaaaacttggaactatagtattatattcttttgcctacctacatgcttacatctgtttgtt |
389 |
Q |
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| T |
39577886 |
tgcttgtgacttggtctactgcatagatcaacaatctatcaaaacttggaactatagtattatatgcttttgcctacctacatgcttacatctgtttgtt |
39577985 |
T |
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| Q |
390 |
t |
390 |
Q |
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| T |
39577986 |
t |
39577986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 39541666 - 39541720
Alignment:
| Q |
133 |
ctgtttggataagagattcagataggaagctttgtgttgcttaagaaaaggtaaa |
187 |
Q |
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| T |
39541666 |
ctgtttgcttaagagattcagataggaagctctgtgttgcttatgaaaaggtaaa |
39541720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 270
Target Start/End: Original strand, 39541747 - 39541778
Alignment:
| Q |
239 |
atttcttcttaattgaaccaatgccttcaatt |
270 |
Q |
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| T |
39541747 |
atttcttcttaattgaaccaatgccttcaatt |
39541778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 39541822 - 39541859
Alignment:
| Q |
313 |
tagatcaacaatctatcaaaacttggaactatagtatt |
350 |
Q |
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| T |
39541822 |
tagatcaacaatctatcaatacttggaactattgtatt |
39541859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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