View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_19 (Length: 409)
Name: NF15342_low_19
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 2139924 - 2139694
Alignment:
| Q |
1 |
agtaaaaacatgaattatatttttaagagatagcaccaattgttaaagatttaagatttaagcacataaattgataacgtgacactcgtcccgcacttat |
100 |
Q |
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| T |
2139924 |
agtaaaaacatcaattatatttttaagagatagcaccaatcgttaaagatttaagatttaagcacataaattgataacgtgacactcgtcccgcacttat |
2139825 |
T |
|
| Q |
101 |
ccacaaaattgataatgttcttgaataaattatccaccgttactttttcatatatacttggaaatagttgtccactaaattcccagctaaataaagagtt |
200 |
Q |
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| T |
2139824 |
ccacaaaattgataatgttcttgaataaattatccactgttaatttttcatatatacttggaaatagttgtccactaaattcccagctaaataaagagtt |
2139725 |
T |
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| Q |
201 |
tcatgctcgactccacctaatttaagtgttg |
231 |
Q |
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| T |
2139724 |
tcatgctcgactccacctaatttaagtgttg |
2139694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 395
Target Start/End: Complemental strand, 2139556 - 2139528
Alignment:
| Q |
367 |
cataaaacattttagatctttaatattat |
395 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2139556 |
cataaaacattttagatctttaatattat |
2139528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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