View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_22 (Length: 393)
Name: NF15342_low_22
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 47179351 - 47179725
Alignment:
| Q |
18 |
gtttcccgttctacaggatcaatcgcaagaagtttatcaataaggggtagagcagacggtggaaaacctttgaatgtctctcttatgcatctcttatatg |
117 |
Q |
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| T |
47179351 |
gtttcccgttctacaggatcaatcgcaagaagtttatcaataaggggtagagcagacggtggaaaacctttgaatgtctctcttatgcatctcttatatg |
47179450 |
T |
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| Q |
118 |
gctctcgaggtttaaacaatgtagcattgggcaactttgacttcttccagtattcatcagaaggtgaaccgcatagtttgtatatcttatgcagttgctc |
217 |
Q |
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| T |
47179451 |
gctctcgaggtttaaacaatgtagcattgggcaactttgacttcttccagtattcatcagaaggtgaaccgcatagtttgtatatcttatgcagttgctc |
47179550 |
T |
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| Q |
218 |
cacctatgcaagaaagaaattagataagttatttgtgattttggataacttgctatgctatataaatataaaattcttacaaactacatgagtcatgaga |
317 |
Q |
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| T |
47179551 |
cacctatgcaagaaagaagttagataagttatttgtgattttggataacttgctatgctatataaatataaaattcttacaaactacacgagtcatgaga |
47179650 |
T |
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| Q |
318 |
taggatataactaaacatacgatctagtgtaccactaaaaagggaaatataccataaacataatgattgtgcgta |
392 |
Q |
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| T |
47179651 |
taggatataactaaacatacgatctagtgtaccactaaaaagggaaatataccataaacataatgattgtgcgta |
47179725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 222
Target Start/End: Complemental strand, 36471702 - 36471503
Alignment:
| Q |
23 |
ccgttctacaggatcaatcgcaagaagtttatcaataaggggtagagcagacggtggaaaacctttgaatgtctctcttatgcatctcttatatggctct |
122 |
Q |
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| T |
36471702 |
ccgttctattggatcaattgcaagaagagtatcgacaagaggaagagcagaaggtggaaaatctttaaatacatctcttatgcatcttttgtatggctct |
36471603 |
T |
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| Q |
123 |
cgaggtttaaacaatgtagcattgggcaactttgacttcttccagtattcatcagaaggtgaaccgcatagtttgtatatcttatgcagttgctccacct |
222 |
Q |
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| T |
36471602 |
cgaggtttgaacaaggtagcattaggcaattttgacttcttccaatactcatccgaaggtgaaccacaaagcttgtatatcttatgcagttgttccacct |
36471503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 6701967 - 6701882
Alignment:
| Q |
138 |
gtagcattgggcaactttgacttcttccagtattcatcagaaggtgaaccgcatagtttgtatatcttatgcagttgctccaccta |
223 |
Q |
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| T |
6701967 |
gtagcatgcggcaactttgactttttccaatagtcttcagaaggagaaccgcatagcttaaatatcttatgtagctgttccaccta |
6701882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 170639 - 170567
Alignment:
| Q |
152 |
ctttgacttcttccagtattcatcagaaggtgaaccgcatagtttgtatatcttatgcagttgctccacctat |
224 |
Q |
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| T |
170639 |
ctttgacttcttccagtattcttcagaaggagatccacagagcttgaagattttatgcagttgctccaactat |
170567 |
T |
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