View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_24 (Length: 373)
Name: NF15342_low_24
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 8e-77; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 183 - 354
Target Start/End: Original strand, 491688 - 491856
Alignment:
| Q |
183 |
gagggataccgatagatttaatgttgaaagaagctctccaagattgagtgacgtgattttaagtggaaaacaactagagatttctccaagaagctcgtct |
282 |
Q |
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| T |
491688 |
gagggataccgatagatttaatgttgcaagaagctctccaagattgagtgacgtgattttaagtggaaaac---tagagatttctccaagaagctcgtct |
491784 |
T |
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| Q |
283 |
aggtcaccgcaaaagtaagagaggtcgagggaggaattccagataatgagtgagaaacgggaaaggttgatg |
354 |
Q |
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| T |
491785 |
aggtcaccgcgaaagtaagagaggtcgagggaggaattccagataatgagtgagaaacgggaacggttgatg |
491856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 491044 - 491147
Alignment:
| Q |
1 |
tagaaaatgaatataatgcaaggcaaacaaaaccatagcgaagtattcacagttggcaagtcgaaac-----aaaataaaaatcatgtcagttttaaaat |
95 |
Q |
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| T |
491044 |
tagaaaatgaatataatgcaaggcaaacaaaaccatagcgaaatattcacagttggcaagtcgaaacaaaataaaataaaaatcatgtcagttgtaaaat |
491143 |
T |
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| Q |
96 |
aaat |
99 |
Q |
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|||| |
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| T |
491144 |
aaat |
491147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 491615 - 491652
Alignment:
| Q |
107 |
tatctccttaattaaaatttgaccaataccttcctcag |
144 |
Q |
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| T |
491615 |
tatctccttaattaaaatttgaccaataccttcctcag |
491652 |
T |
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