View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_27 (Length: 329)
Name: NF15342_low_27
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 23 - 329
Target Start/End: Complemental strand, 48115332 - 48115025
Alignment:
| Q |
23 |
ttacttacttaggcaaacaataaggaatacagtcacatggattttctgtccaactcatatagctttaaatcttttt-attctgtttcattgagaagaaaa |
121 |
Q |
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| T |
48115332 |
ttacttacttaggcaaacaatagggaatacagtcacatggattttctgtccaactcatatagctttaaatcttttttattctgtttcattgagaagaaaa |
48115233 |
T |
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| Q |
122 |
gtaagatgttttatataacagttaagagaaacacattgaataagataggacatgaaaataagagtatggaagaaaagaagaattcacattttacatttag |
221 |
Q |
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| T |
48115232 |
gtaagatgttttatataacagttaagagaaacacattgaataagataggacatgaaaataagagtatggaagcaaagaagaattctcattttacatgtag |
48115133 |
T |
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| Q |
222 |
gtttttgtaaaagttgagataggttcaatatcgagctttattcaaaatccgttcagttcacgattatcgaaccaatcatacaacgttgtagatgtttagt |
321 |
Q |
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| T |
48115132 |
gtttttgtaaaagttgagataggttcaatatcgagctttattcaaaatccgtttaattcacgattatcgaaccaatcatacaacgtttgagatgtttagt |
48115033 |
T |
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| Q |
322 |
ccataagt |
329 |
Q |
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| T |
48115032 |
ccataagt |
48115025 |
T |
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