View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_28 (Length: 326)
Name: NF15342_low_28
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 276222 - 276484
Alignment:
| Q |
16 |
cagctttgagttgttcaagagttgcatt--tggtggtgccatggcgattccattctccaccaatccctagtactcatttgatcataataaattatccata |
113 |
Q |
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| T |
276222 |
cagctttgagttgttcaagagttgcattaatggtggttccatggtgattccattctccaccaatccctagtactcatttgatcataataaattatccata |
276321 |
T |
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| Q |
114 |
agttcggcctagcctagtgatcatagtatccatcaaacttggaaattgcatgtggcttcaaagcttgttgatcctccatagataaatcttcaaatcatct |
213 |
Q |
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| T |
276322 |
agttcggcctagcctagtgatcatagtatccatcaaacttggaaattgcatgtggcttgaaagcttgttgatcctccatagataaatcttcaaatcatct |
276421 |
T |
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| Q |
214 |
tgattaagatctatgagaaacttgcaacgaaaacagttttaactaacttccctccaaaaactg |
276 |
Q |
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| T |
276422 |
tgattaagatctatgagaaacttgcaacgaaaacagttttaactaacttccctccaaaaactg |
276484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 2610322 - 2610402
Alignment:
| Q |
16 |
cagctttgagttgttcaagagttgcatttggtggtgccatggcgattccattctccaccaatccctagtactcatttgatc |
96 |
Q |
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| T |
2610322 |
cagctttgagttgttcaggagttgcatttgatggtgccacagtgattccagtctccaccaatccgcagtactcctttgatc |
2610402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 299
Target Start/End: Original strand, 2610565 - 2610627
Alignment:
| Q |
242 |
gaaaacagttttaactaacttccctcc-aaaaactgtgtt----tttgtaaaactgaatgttt |
299 |
Q |
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| T |
2610565 |
gaaaactgttttaactaacttccctccaaaaaactgtgtttttgtttgtaaaactgaatgttt |
2610627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 286 - 314
Target Start/End: Original strand, 276478 - 276506
Alignment:
| Q |
286 |
aaaactgaatgtttttgctaaacacttca |
314 |
Q |
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| T |
276478 |
aaaactgaatgtttttgctaaacacttca |
276506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 4467936 - 4467976
Alignment:
| Q |
253 |
taactaacttccctccaaaaactgtgtttttgtaaaactga |
293 |
Q |
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| T |
4467936 |
taactaacttccctccaaaaactgtgtttttgtaaaactga |
4467976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 4467644 - 4467701
Alignment:
| Q |
19 |
ctttgagttgttcaagagttgcatttggtggtgccatggcgattccattctccaccaa |
76 |
Q |
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| T |
4467644 |
cttttagttgttcaggagttgcatttggtggtgccatggtgattcaagtttccaccaa |
4467701 |
T |
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