View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_29 (Length: 320)
Name: NF15342_low_29
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 15 - 306
Target Start/End: Complemental strand, 41655436 - 41655137
Alignment:
| Q |
15 |
acctgtggtatgtgcaaataaatgtagttctttgcagtagttggattgtgattttctgtacctttgctccaatcataacaaacctgtagacaatgtgtaa |
114 |
Q |
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| T |
41655436 |
acctgtggtatgtgcaaataaatgtagttctttgcagtagttggattgtgagtttctgcacctttgctccaatcataacaaacctgtagacaatgtgtaa |
41655337 |
T |
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| Q |
115 |
aagttgtttcagagtcaaattatggtaacttaattgaaggcacatatcaacaggtcc----ataaaatagcaagcaaattatttttattgtttttaaaac |
210 |
Q |
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| T |
41655336 |
aagttgtttcagagtcaaattatggtaacttaattgaaggcacatatcaacaggtccatatataaaatagcaagcaaattatttttattgtttttaaaac |
41655237 |
T |
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| Q |
211 |
atctatttgatatgcataaaattgacagtttaaccctcaaggctcaaatatctaatccaagcgacaaat----tataattaactgtctaaacatgatgtt |
306 |
Q |
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| T |
41655236 |
atctatttgatatgcataaaattgacagtttaaccctcaaggctcaaatatctaatccaagcgacaaattatatataattaactgtctaaacatgatgtt |
41655137 |
T |
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Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 28812771 - 28812862
Alignment:
| Q |
15 |
acctgtggtatgtgcaaataaatgtagttctttgcagtagttggattgtgattttctgtacctttgctccaatcataacaaacctgtagaca |
106 |
Q |
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|||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |
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| T |
28812771 |
acctgtggtaagtgcatatatatgtagttctttgctgtagttggattgtgattttccgcacctttgctccaatcataacaaacctatagaca |
28812862 |
T |
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