View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15342_low_31 (Length: 314)
Name: NF15342_low_31
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 265
Target Start/End: Complemental strand, 38901525 - 38901273
Alignment:
| Q |
12 |
attatactctactttgttaaataatggagagatcttcatatttgattaaaatttaatcacataaagttcacatttttctcttaaaacacggaaacatgaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
38901525 |
attatactctactttgttaaataatggagggatcttcatatttgattaaaatttaatcacataaagttcacatttttctcttaaaacacaggaacatgaa |
38901426 |
T |
|
| Q |
112 |
tcttcttacttatatgatgtttaatgattcctccgatcctatttataagaaatattttgttgactcaaatatatttttaagaaaagactgaaatgagtat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38901425 |
tcttcttacttatatgatgtttaatgattcctccgattctatttataagaaatattttgttgactcaaatatatttttaagaaaagactaaaatgagtat |
38901326 |
T |
|
| Q |
212 |
atcaatttannnnnnncaatgtgaaacctcttgtttataattgacacttacaac |
265 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | |||| ||||||||| |
|
|
| T |
38901325 |
atcaattta-ttttttcaatgtgaaacctcttgtttacacttgaaacttacaac |
38901273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 168
Target Start/End: Complemental strand, 10205071 - 10205043
Alignment:
| Q |
140 |
tcctccgatcctatttataagaaatattt |
168 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10205071 |
tcctccgatcctatttataagaaatattt |
10205043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 168
Target Start/End: Original strand, 15726762 - 15726791
Alignment:
| Q |
139 |
ttcctccgatcctatttataagaaatattt |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
15726762 |
ttcctccgatcctatttataagaaatattt |
15726791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University