View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_32 (Length: 313)
Name: NF15342_low_32
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 1464036 - 1464324
Alignment:
| Q |
1 |
aaacaaggtaggttattttccttttcactttatcatttcgtcacattgttgataaggacaagcctttgtgcaactgtaaggttgtcgacttatgttcaaa |
100 |
Q |
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| T |
1464036 |
aaacaaggtaggttattttctttttcactttatcatttcgtcacattgttgataaggacaagcctttgtgcaactgtaaggttgtcgacttatgttcaaa |
1464135 |
T |
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| Q |
101 |
tattggaaataacctatctgtttgcagggataaggccgcgtacatatctaccttgtccatactccgcttgatgatagcctcgtgcacttgcannnnnnnn |
200 |
Q |
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| T |
1464136 |
tattggaaataacctatctgtttgcagggataaggccgcgtacatatctaccttgtccatactccgcttgctgatagcctcgtgcacttgcatttttttt |
1464235 |
T |
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| Q |
201 |
ccttttatctaattgtttcatattttctcgttacagactgccttcacatcaaagaaagactatggtagagaaaatagggaagcacaatg |
289 |
Q |
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| T |
1464236 |
ccttttatctaattgtttcatattttctcgttacagactgccttcacatcaaagaaagactatggtagagaaaatagggaagcacaatg |
1464324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 1495455 - 1495399
Alignment:
| Q |
233 |
acagactgccttcacatcaaagaaagactatggtagagaaaatagggaagcacaatg |
289 |
Q |
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| T |
1495455 |
acagactgccttcactacaaagaaagactatggaaaagaagagagggaagcacaatg |
1495399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 22 - 289
Target Start/End: Original strand, 26791775 - 26792036
Alignment:
| Q |
22 |
ttttcactttatcatttcgtcacattgttgataaggacaagcctttgtgcaactgtaaggttgtcgacttatgttcaaatattggaaataacctatctgt |
121 |
Q |
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| T |
26791775 |
ttttcgctttatcatttggtcac---gttgataaggacgagccttggcgcaactctaaggttgttcac--atgttcaaatattggaaatagtatatctgc |
26791869 |
T |
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| Q |
122 |
ttgcagggataaggccgcgtacatatctaccttgtccatactccgcttgatgatagcctcgtgcacttgcannnnnnnncctt-ttatctaattgt-ttc |
219 |
Q |
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||| ||||||||||| ||| | ||||||||| ||| ||||| ||||| | ||||||||||||||||| | || ||||||||| || || |
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| T |
26791870 |
ttgtagggataaggctgcg---acatctaccttctccgaactcctcttgacgggagcctcgtgcacttgcattttttttctttgttatctaatcgtgttt |
26791966 |
T |
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| Q |
220 |
atattttctcgttacagactgccttcacatcaaagaaagactatggtagagaaaatagggaagcacaatg |
289 |
Q |
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| T |
26791967 |
atattttctcattacagactgccttcacttcaaagaaagactatggtagagaacagagggaagcacaatg |
26792036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 50277990 - 50278023
Alignment:
| Q |
232 |
tacagactgccttcacatcaaagaaagactatgg |
265 |
Q |
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| T |
50277990 |
tacagactgccttcacaacaaagaaagactatgg |
50278023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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