View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_43 (Length: 250)
Name: NF15342_low_43
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_43 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 39576966 - 39577200
Alignment:
| Q |
12 |
atgaaaaaggaaagctccctgtacgttaagacgtgattggttagttaggattttagacacatttattataataatttatttatttgttcaattcaatgct |
111 |
Q |
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| T |
39576966 |
atgaaaaaggaaagctc----tacgttaagacgtgattggttagttaggattttagatacatttattataataatttatttatttgttcaattcaatgct |
39577061 |
T |
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| Q |
112 |
gcggagaatgaattaagaagcagctaataatgcaacaaaatggaaaggcactagagtctaagtaacccttggagggcatgaaaattttcatgaggtccaa |
211 |
Q |
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| T |
39577062 |
gcggagaatgaattaagaagcagctaataatgcaacaaaatggaaaggcactagagtctaagtaacccttggagggcatgaaaattttcatgaggtccaa |
39577161 |
T |
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| Q |
212 |
actggtagtatgccttgttccgacgttcttgtaatggaa |
250 |
Q |
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| T |
39577162 |
actggtagtatgacttgttccgacgttcttgtaatggaa |
39577200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 39581520 - 39581755
Alignment:
| Q |
12 |
atgaaaaaggaaagctccctgtacgttaagacgtgattggttagttaggattttagacacatttattataataatttatttatttgttcaattcaatgct |
111 |
Q |
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| T |
39581520 |
atgaaaaatggaagttccctgtacgttaaaacatgattggttggtttggattttcgacgcacttattataataatttatttatttattca----aatgct |
39581615 |
T |
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| Q |
112 |
gcggagaatgaattaagaagcagctaataatgca-acaaaatggaaaggcactagagtctaagtaac-ccttggaggg-catgaaaattttcatgaggtc |
208 |
Q |
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| T |
39581616 |
gtggaggatgaattaagaagctgataataatgcagccaaaatgaaaaggcaccaaagtctaaatatctctttccagggccatggaaa--ttcatgaggtc |
39581713 |
T |
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| Q |
209 |
caaactggtagtatgccttgttccgacgttcttgtaatggaa |
250 |
Q |
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| T |
39581714 |
caaattggtagtatgatttgtcgcgacgttcttataatggaa |
39581755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 39571784 - 39571930
Alignment:
| Q |
12 |
atgaaaaaggaaagctccctgtacgttaagacgtgattggttagttaggattttagacacatttattataataa----tttatttatttgttcaattc-a |
106 |
Q |
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| T |
39571784 |
atgaaaaatgaaagttccctgtacgttcaaatgtgattggttagttttggttttagacgcacttaatataataatttgtttatttatttgttcaattcaa |
39571883 |
T |
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| Q |
107 |
atgctgcggagaatgaattaagaagcagctaataatgcaacaaaatg |
153 |
Q |
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| T |
39571884 |
atgttgcggataacgtattaagaagctgctaataatgcaataaaatg |
39571930 |
T |
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