View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_44 (Length: 246)
Name: NF15342_low_44
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_44 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 9608460 - 9608226
Alignment:
| Q |
13 |
aatattgcaaatctgcattagtttgtcctaacata-tatattttaactcacaataaccnnnnnnngaataaaagatattgacctgtatatattatcagca |
111 |
Q |
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|||||| |||||| |||||||||||| ||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9608460 |
aatattacaaatcagcattagtttgtactagcatggtatattttaactcacaataaccaaaaaaagaataaaagatattgacctgtatatattatcagca |
9608361 |
T |
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| Q |
112 |
gaaccaaactcaatataactgaatttacattacataaacataacattccaataaaagaacaaattaaaaatattgtctaaaaagttaagatattgacaca |
211 |
Q |
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| T |
9608360 |
gagccaaactcaatataactgaatttacattacataaacataacattccaataaaagaacaaattaaaaatattgtctaaaaatttaagatattgacaca |
9608261 |
T |
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| Q |
212 |
attttatttttgtatcaaaggaggaactaaactaa |
246 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
9608260 |
attttatttttgtatcaaaggaggaactaaactaa |
9608226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 9836031 - 9835797
Alignment:
| Q |
13 |
aatattgcaaatctgcattagtttgtcctaacata-tatattttaactcacaataaccnnnnnnngaataaaagatattgacctgtatatattatcagca |
111 |
Q |
| |
|
|||||| |||||| |||||||||||| ||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9836031 |
aatattacaaatcagcattagtttgtactagcatggtatattttaactcacaataaccaaaaaaagaataaaagatattgacctgtatatattatcagca |
9835932 |
T |
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| Q |
112 |
gaaccaaactcaatataactgaatttacattacataaacataacattccaataaaagaacaaattaaaaatattgtctaaaaagttaagatattgacaca |
211 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9835931 |
gagccaaactcaatataactgaatttacattacataaacataacattccaataaaagaacaaattaaaaatattgtctaaaaatttaagatattgacaca |
9835832 |
T |
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| Q |
212 |
attttatttttgtatcaaaggaggaactaaactaa |
246 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
9835831 |
attttatttttgtatcaaaggaggaactaaactaa |
9835797 |
T |
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