View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15342_low_45 (Length: 244)
Name: NF15342_low_45
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 103 - 239
Target Start/End: Original strand, 8269630 - 8269766
Alignment:
| Q |
103 |
aactgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttat |
202 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8269630 |
aactgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttat |
8269729 |
T |
|
| Q |
203 |
tataggttgcatttttctttcaaatagtaagcctatg |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
8269730 |
tataggttgcatttttctttcaaatagtaagcctatg |
8269766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 795440 - 795307
Alignment:
| Q |
106 |
tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat |
205 |
Q |
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|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
795440 |
tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat |
795341 |
T |
|
| Q |
206 |
aggttgcatttttctttcaaatagtaagcctatg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
795340 |
aggttgcatttttctttcaaatagtaagcctatg |
795307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 800195 - 800062
Alignment:
| Q |
106 |
tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat |
205 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
800195 |
tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat |
800096 |
T |
|
| Q |
206 |
aggttgcatttttctttcaaatagtaagcctatg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
800095 |
aggttgcatttttctttcaaatagtaagcctatg |
800062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 8274348 - 8274481
Alignment:
| Q |
106 |
tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat |
205 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8274348 |
tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat |
8274447 |
T |
|
| Q |
206 |
aggttgcatttttctttcaaatagtaagcctatg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
8274448 |
aggttgcatttttctttcaaatagtaagcctatg |
8274481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 19940577 - 19940710
Alignment:
| Q |
106 |
tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat |
205 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19940577 |
tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat |
19940676 |
T |
|
| Q |
206 |
aggttgcatttttctttcaaatagtaagcctatg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
19940677 |
aggttgcatttttctttcaaatagtaagcctatg |
19940710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 19945331 - 19945464
Alignment:
| Q |
106 |
tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat |
205 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19945331 |
tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat |
19945430 |
T |
|
| Q |
206 |
aggttgcatttttctttcaaatagtaagcctatg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
19945431 |
aggttgcatttttctttcaaatagtaagcctatg |
19945464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 6688641 - 6688774
Alignment:
| Q |
106 |
tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat |
205 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6688641 |
tgttggtgaacattgtttaaggacccacatgcacgtgggataaccagccaaagcaatttactgaagcaaattgtcacacaaagtctcatgcatttattat |
6688740 |
T |
|
| Q |
206 |
aggttgcatttttctttcaaatagtaagcctatg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
6688741 |
aggttgcatttttctttcaaatagtaagcctatg |
6688774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 6693381 - 6693514
Alignment:
| Q |
106 |
tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat |
205 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
6693381 |
tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaaacaatttgttgaaacaaattgtcacacaaagtctcatgcatttattat |
6693480 |
T |
|
| Q |
206 |
aggttgcatttttctttcaaatagtaagcctatg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
6693481 |
aggttgcatttttctttcaaatagtaagcctatg |
6693514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 26199352 - 26199484
Alignment:
| Q |
106 |
tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat |
205 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26199352 |
tgttggtgaacattgtgtaaggacccacatgcacgtgg-ataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatatattat |
26199450 |
T |
|
| Q |
206 |
aggttgcatttttctttcaaatagtaagcctatg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
26199451 |
aggttgcatttttctttcaaatagtaagcctatg |
26199484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 3957903 - 3957799
Alignment:
| Q |
1 |
actccacctctggtctctctctatcaaagccaggtgttgtccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggtagcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3957903 |
actccacctctggtctctctctatcaaagccgggtgttgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcg |
3957804 |
T |
|
| Q |
101 |
cgaac |
105 |
Q |
| |
|
|||| |
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|
| T |
3957803 |
tgaac |
3957799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 3935767 - 3935711
Alignment:
| Q |
41 |
ccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggta |
97 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |
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|
| T |
3935767 |
ccttgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggta |
3935711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 4022830 - 4022890
Alignment:
| Q |
38 |
tgtccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggtag |
98 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||| || ||||||||||||||||||||| |
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|
| T |
4022830 |
tgtccttgccgtaaccttgattttaaaccttctcttattgtttgctatgctagttaggtag |
4022890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 3922411 - 3922352
Alignment:
| Q |
37 |
ttgtccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggt |
96 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||| |
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|
| T |
3922411 |
ttgtccatgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggt |
3922352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 3815439 - 3815493
Alignment:
| Q |
43 |
ttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggta |
97 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |
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|
| T |
3815439 |
ttgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggta |
3815493 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 4007672 - 4007731
Alignment:
| Q |
38 |
tgtccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggta |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | || ||||||| ||||||||||| |
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|
| T |
4007672 |
tgtccttgctgtaaccttgattttaaaccttgtatgattctttgctactctagttaggta |
4007731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 3999874 - 3999934
Alignment:
| Q |
37 |
ttgtccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggta |
97 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| | ||||| ||||| ||||||||||| |
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|
| T |
3999874 |
ttgtccttgctgcaaccttgattttgaaccttgtatgatttttcgctattctagttaggta |
3999934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 3998681 - 3998740
Alignment:
| Q |
38 |
tgtccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggta |
97 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | || ||||||| ||||||||||| |
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|
| T |
3998681 |
tgtccttgctgtaaccttaattttaaaccttgtatgattctttgctacactagttaggta |
3998740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 3984753 - 3984814
Alignment:
| Q |
37 |
ttgtccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggtag |
98 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| |||| |||||||| ||||||||| |
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|
| T |
3984753 |
ttgtccttgctgtaaccttgattttaacctgtgtctgacttttggctatgctggttaggtag |
3984814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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