View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_46 (Length: 244)
Name: NF15342_low_46
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 39134126 - 39133988
Alignment:
| Q |
1 |
aagaataacatcattctaaaatacagtgaaaatgatgaaataaacacatttaaaataaccagatacgatttttattcatacttgaacatataattaacct |
100 |
Q |
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| T |
39134126 |
aagaataacatcattctaaaatacagtgaaaatgatgaaataaacatatttaaaataaccagatacgatttttattcatacttgaacatataattaacat |
39134027 |
T |
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| Q |
101 |
tacacttttgaaacagctagcatgaaaaatcaccatcat |
139 |
Q |
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| T |
39134026 |
tacacttttgaaacagctagcatgaaaaatcaccatcat |
39133988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 39133611 - 39133521
Alignment:
| Q |
140 |
aagtcgagcctagtacgcttattcttgtactagcctggaattaggtaataataatatcatgaaactaactgaaagctcttctgcttccacc |
230 |
Q |
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| T |
39133611 |
aagtcgagcctagtacgcttattcttgtactagcctggaattaggtaataataatatcatgaaactaactgaaagctcttctgcttccacc |
39133521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39134653 - 39134609
Alignment:
| Q |
1 |
aagaataacatcattctaaaatacagtgaaaatgatgaaataaac |
45 |
Q |
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| T |
39134653 |
aagaataacatcattattaaatacattgaaaatgattaaataaac |
39134609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 26059684 - 26059642
Alignment:
| Q |
188 |
taataatatcatgaaactaactgaaagctcttctgcttccacc |
230 |
Q |
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| T |
26059684 |
taataatatcatgaaactgacttaaagctctgctgcttccacc |
26059642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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