View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_47 (Length: 239)
Name: NF15342_low_47
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28153617 - 28153396
Alignment:
| Q |
1 |
tcataaatgaataaataaatagaaaaagaaatattggtgttattgacattaattacctgattaggttggcttgcaacatctaattctgtaatccatattg |
100 |
Q |
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| T |
28153617 |
tcataaatgaataaataaatagaaaaacaaatattggtgttattgacattaattacctgattaggttggcttgcaacatctaattctgtaatccatattg |
28153518 |
T |
|
| Q |
101 |
gcaaacgagaagcagtaagggtatcaatggaagctctcatgtaaggaaagttgagagggagagaagagaaatgagactccagaccaattccaagcggcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28153517 |
gcaaacgagaagcagtaagggtatcaatggaagctctcatgtaaggaaagttgagagggagagaagagaaatgagactccagaccaattccaagcggcaa |
28153418 |
T |
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| Q |
201 |
ttgcctattcacactttgaatt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
28153417 |
ttgcctattcacactttgaatt |
28153396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 221
Target Start/End: Original strand, 8023116 - 8023284
Alignment:
| Q |
53 |
ttacctgattaggttggcttgcaacatctaattctgtaatccatattggcaaacgagaagcagtaagggtatcaatggaagctctcatgtaaggaaagtt |
152 |
Q |
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| T |
8023116 |
ttacctgattaggttggctcgcgacgtctaattctgtgatccatattggcaaaccagtggcgcgaagggtatcaagggaagctctcatgtaaggcaagtt |
8023215 |
T |
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| Q |
153 |
gagagggagagaagagaaatgagactccagaccaattccaagcggcaattgcctattcacactttgaat |
221 |
Q |
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| T |
8023216 |
aggaggactattagggaaatgagactcaagtccaattccaagaggcaattgactattcacactttgaat |
8023284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 53 - 210
Target Start/End: Original strand, 21543412 - 21543569
Alignment:
| Q |
53 |
ttacctgattaggttggcttgcaacatctaattctgtaatccatattggcaaacgagaagcagtaagggtatcaatggaagctctcatgtaaggaaagtt |
152 |
Q |
| |
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|||||||||| || |||||||||||||||||||| || |||||||||||||||| || |||| |||| |||||| ||| |||||||||||||| ||||| |
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| T |
21543412 |
ttacctgatttggctggcttgcaacatctaattcagtgatccatattggcaaaccagtggcagcaaggatatcaagggaggctctcatgtaaggcaagtt |
21543511 |
T |
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| Q |
153 |
gagagggagagaagagaaatgagactccagaccaattccaagcggcaattgcctattc |
210 |
Q |
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|||| | | || ||||||||||| || ||||||||||| ||||||||| ||||| |
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| T |
21543512 |
aggaggaaaattaggaaaatgagactcgagtccaattccaagaggcaattgcttattc |
21543569 |
T |
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