View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_5 (Length: 632)
Name: NF15342_low_5
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 14 - 614
Target Start/End: Complemental strand, 28938838 - 28938239
Alignment:
| Q |
14 |
gagatgaacttagattaagacacccttatgattcacaaattgtggttatgagacacaatgtttggcgcgtcaaaggcctcatacaggtacaaaatcggtt |
113 |
Q |
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| T |
28938838 |
gagatgaacttagattaagacacccttatgattcacaaattgtggttatgagacacaatgtttggcgcgtcaaaggcctcatacaggtacaaaatcggtt |
28938739 |
T |
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| Q |
114 |
aaatatatttttagtccgtaannnnnnnnnataattcctgttattagtctttgtatccacttcagtccttaaaatttacaaaactacatgctttttgcag |
213 |
Q |
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| T |
28938738 |
aaatatatttttagtccgtaatttttttt-ataattcctgttattagtctttgtatccacctcagtccttaaaatttacaaaactacatgctttttgcag |
28938640 |
T |
|
| Q |
214 |
gtttcgcgatcgatcggtgatgcatatctgaagaaagcagaattcaatagggagcctctaccatcaaagttcagacttgctgaaacatttttcaaaccaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28938639 |
gtttcgcgatcgatcggtgatgcatatctgaagaaagcagaattcaatagggagcctctaccatcaaagttcagactcgctgaaacatttttcaaaccaa |
28938540 |
T |
|
| Q |
314 |
ttctcagctgtgagccatcaatttcaacacataaacttcatcctgatgaccaatttctcatatttgcttcggatggattatgggagcagcttagcaacca |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28938539 |
ttctcagctgtgagccatcaatttcaacacataaacttcatcctgatgaccaatttctcatatttgcttcggatggattatgggagcagcttagcaacca |
28938440 |
T |
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| Q |
414 |
agaggctgttaacatagtcagcaacaatccacctaatgttaggctccattttatttttatgattcgatgttattgttatcattcgcgctttcacattatt |
513 |
Q |
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| T |
28938439 |
agaggctgttaacatagtcagcaacaatccacctaatgttaggctccattttatttttatgattctatgttattgttatcattcgcgctttcacattatt |
28938340 |
T |
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| Q |
514 |
gtgaatctggaccctcaaatcttgatcaaacagtccacgtgttttagcttgttttgcatgttaaaatacgaactatccgatcttaatcagacggattaaa |
613 |
Q |
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| T |
28938339 |
gcgaatctggaccctcaaatcttgatcaaacagtccacgtgttttagcttgttttgcatgttaaaatacgagctatccgatcttaatcagaccgattaaa |
28938240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 364 - 428
Target Start/End: Original strand, 52554954 - 52555018
Alignment:
| Q |
364 |
caatttctcatatttgcttcggatggattatgggagcagcttagcaaccaagaggctgttaacat |
428 |
Q |
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| T |
52554954 |
caatttcttatatttgcatcagatggattatgggagcacttgagcaatcaagaagctgttgacat |
52555018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 6e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 205 - 445
Target Start/End: Complemental strand, 40325951 - 40325711
Alignment:
| Q |
205 |
tttttgcaggtttcgcgatcgatcggtgatgcatatctgaagaaagcagaattcaatagggagcctctaccatcaaagttcagacttgctgaaacatttt |
304 |
Q |
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|||||||||||||| |||| || ||||||||||||||||||||||||||||| || || |||||||| ||| ||||| ||||| ||||||| |||| |
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| T |
40325951 |
tttttgcaggtttcaagatccataggtgatgcatatctgaagaaagcagaatttaacagagagcctctgccacagaagtttagactgcctgaaacctttt |
40325852 |
T |
|
| Q |
305 |
tcaaaccaattctcagctgtgagccatcaatttcaacacataaacttcatcctgatgaccaatttctcatatttgcttcggatggattatgggagcagct |
404 |
Q |
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|||| ||||||||||| ||||||||||||| ||| |||||| | || ||||| || ||||||||||| |||||||| ||||| ||||||||||| || |
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| T |
40325851 |
tcaagccaattctcagtagtgagccatcaatatcagttcataaaatccaacctgaagatcaatttctcatctttgcttctgatggtttatgggagcatct |
40325752 |
T |
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| Q |
405 |
tagcaaccaagaggctgttaacatagtcagcaacaatccac |
445 |
Q |
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| T |
40325751 |
tagcaaccaagtagctgtgaatatcgttagcaacaatccac |
40325711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 40326584 - 40326514
Alignment:
| Q |
34 |
cacccttatgattcacaaattgtggttatgagacacaatgtttggcgcgtcaaaggcctcatacaggtaca |
104 |
Q |
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||||| ||||||||||| ||||||||||||| |||| |||||||| || |||||| ||||||||||||| |
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| T |
40326584 |
cacccctatgattcacagattgtggttatgaaacactcagtttggcgtgtgaaaggcatcatacaggtaca |
40326514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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