View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15342_low_50 (Length: 230)

Name: NF15342_low_50
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15342_low_50
NF15342_low_50
[»] chr4 (20 HSPs)
chr4 (1-214)||(49202423-49202639)
chr4 (22-111)||(3155486-3155576)
chr4 (24-111)||(44863061-44863149)
chr4 (35-111)||(44138442-44138519)
chr4 (69-111)||(17204011-17204053)
chr4 (35-111)||(50662842-50662919)
chr4 (61-111)||(25904361-25904411)
chr4 (69-111)||(47119090-47119132)
chr4 (44-111)||(50681218-50681286)
chr4 (61-111)||(27030-27080)
chr4 (61-111)||(437377-437427)
chr4 (77-111)||(23319731-23319765)
chr4 (22-95)||(42641730-42641804)
chr4 (81-111)||(45935380-45935410)
chr4 (74-111)||(4212815-4212852)
chr4 (74-111)||(27330185-27330222)
chr4 (70-111)||(39603587-39603628)
chr4 (74-111)||(44797765-44797802)
chr4 (83-111)||(22030092-22030120)
chr4 (36-111)||(22539158-22539234)
[»] chr7 (18 HSPs)
chr7 (33-110)||(33552929-33553007)
chr7 (40-111)||(46139825-46139897)
chr7 (61-111)||(18865197-18865247)
chr7 (46-103)||(23989615-23989673)
chr7 (69-111)||(33266623-33266665)
chr7 (30-106)||(21619295-21619372)
chr7 (22-53)||(3802236-3802267)
chr7 (21-103)||(20881732-20881815)
chr7 (22-111)||(43250776-43250867)
chr7 (69-111)||(11619341-11619383)
chr7 (73-107)||(22296364-22296398)
chr7 (61-111)||(27863844-27863894)
chr7 (73-111)||(28900760-28900798)
chr7 (61-111)||(33128630-33128680)
chr7 (21-58)||(28702697-28702734)
chr7 (40-106)||(7612346-7612414)
chr7 (83-111)||(28210328-28210356)
chr7 (83-111)||(40377997-40378025)
[»] chr2 (18 HSPs)
chr2 (22-111)||(26143738-26143827)
chr2 (61-111)||(26626759-26626809)
chr2 (61-111)||(27695734-27695784)
chr2 (61-111)||(43570299-43570349)
chr2 (22-57)||(13864588-13864623)
chr2 (38-111)||(2416196-2416270)
chr2 (61-111)||(15757813-15757863)
chr2 (81-111)||(40835437-40835467)
chr2 (61-111)||(41407174-41407224)
chr2 (22-111)||(42457831-42457921)
chr2 (82-111)||(7043880-7043909)
chr2 (82-111)||(41449791-41449820)
chr2 (35-107)||(44589922-44589995)
chr2 (83-111)||(9174697-9174725)
chr2 (40-111)||(19608740-19608812)
chr2 (75-111)||(40279084-40279120)
chr2 (75-111)||(41812235-41812271)
chr2 (64-111)||(41880642-41880690)
[»] chr5 (15 HSPs)
chr5 (61-111)||(32372497-32372547)
chr5 (40-111)||(28776858-28776930)
chr5 (61-111)||(24030549-24030599)
chr5 (61-111)||(40426635-40426685)
chr5 (61-111)||(3520304-3520354)
chr5 (61-111)||(34736663-34736713)
chr5 (61-104)||(7984868-7984911)
chr5 (61-104)||(32703585-32703628)
chr5 (38-111)||(9202861-9202935)
chr5 (22-56)||(11054125-11054159)
chr5 (61-111)||(13697906-13697956)
chr5 (82-111)||(12433538-12433567)
chr5 (75-111)||(3735652-3735688)
chr5 (74-106)||(8130282-8130314)
chr5 (35-102)||(39105356-39105424)
[»] chr1 (20 HSPs)
chr1 (44-111)||(51688578-51688646)
chr1 (66-111)||(45855734-45855779)
chr1 (61-111)||(27820477-27820527)
chr1 (69-111)||(27970418-27970460)
chr1 (61-111)||(29904633-29904683)
chr1 (69-111)||(46423153-46423195)
chr1 (61-111)||(47498980-47499030)
chr1 (36-111)||(5894274-5894350)
chr1 (69-111)||(17727250-17727292)
chr1 (34-110)||(37593778-37593856)
chr1 (61-111)||(38247327-38247376)
chr1 (69-111)||(41195349-41195391)
chr1 (6-55)||(1432455-1432504)
chr1 (78-111)||(27976266-27976299)
chr1 (82-111)||(39906525-39906554)
chr1 (82-110)||(836491-836519)
chr1 (83-111)||(3887760-3887788)
chr1 (75-111)||(33541869-33541905)
chr1 (83-111)||(37473272-37473300)
chr1 (75-111)||(38189658-38189694)
[»] chr8 (14 HSPs)
chr8 (61-110)||(9956949-9956998)
chr8 (61-111)||(14956442-14956492)
chr8 (22-111)||(26215379-26215469)
chr8 (22-57)||(4558736-4558771)
chr8 (22-56)||(7646145-7646179)
chr8 (69-111)||(22790513-22790555)
chr8 (81-111)||(29819047-29819077)
chr8 (61-111)||(36963492-36963542)
chr8 (61-111)||(38750231-38750281)
chr8 (69-111)||(40981003-40981045)
chr8 (82-111)||(27752435-27752464)
chr8 (82-111)||(34236045-34236074)
chr8 (22-54)||(1470953-1470985)
chr8 (61-113)||(8407291-8407343)
[»] chr3 (25 HSPs)
chr3 (35-104)||(402651-402721)
chr3 (61-111)||(47132250-47132300)
chr3 (23-92)||(52597591-52597660)
chr3 (71-111)||(849555-849595)
chr3 (62-114)||(30365679-30365731)
chr3 (72-112)||(36507238-36507278)
chr3 (64-111)||(24085465-24085512)
chr3 (22-56)||(2304338-2304372)
chr3 (69-111)||(3845717-3845759)
chr3 (61-107)||(28240213-28240259)
chr3 (61-111)||(30956773-30956823)
chr3 (61-111)||(30972585-30972635)
chr3 (61-111)||(34034044-34034094)
chr3 (77-111)||(34235229-34235263)
chr3 (61-111)||(34610943-34610993)
chr3 (61-111)||(35959603-35959653)
chr3 (81-111)||(46886854-46886884)
chr3 (81-123)||(50946409-50946451)
chr3 (82-111)||(944366-944395)
chr3 (69-106)||(22203340-22203377)
chr3 (74-103)||(39122849-39122878)
chr3 (70-106)||(27384205-27384241)
chr3 (22-50)||(33880640-33880668)
chr3 (75-111)||(46407506-46407542)
chr3 (61-109)||(47249605-47249653)
[»] chr6 (8 HSPs)
chr6 (35-107)||(35069439-35069512)
chr6 (76-111)||(10645481-10645516)
chr6 (22-56)||(2514641-2514675)
chr6 (69-111)||(6538390-6538432)
chr6 (76-110)||(9632785-9632819)
chr6 (22-54)||(781326-781358)
chr6 (28-56)||(10616889-10616917)
chr6 (59-107)||(34430593-34430641)
[»] scaffold0018 (1 HSPs)
scaffold0018 (69-111)||(157980-158022)
[»] scaffold0050 (1 HSPs)
scaffold0050 (75-111)||(58477-58513)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 49202639 - 49202423
Alignment:
Q  1 taccgaaacaattaaaatctgttttaccttttattatagaaatagcttatacataaaacctatcatgttaagtgcttgtactataagctgcaaataagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49202639 taccgaaacaattaaaatctgttttaccttttattatagaaatagcttatacataaaacctatcatgttaagtgcttgtactataagctgcaaataagtt 49202540  T
Q  101 gtttatccaaaaaattcctatatctttaagtaacccttcctgcttacgacatatcacaccctcaaaacagagaaaaatatataa---ataacatgatctc 197  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  49202539 gtttatccaaacaattcctatatctttaagtaacccttcctgcttacgacatatcacaccctcaaaacagagaaaaatatataaataataacatgatctc 49202440  T
Q  198 accatatcagatgtaat 214  Q
    |||||||||||||||||    
T  49202439 accatatcagatgtaat 49202423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 3155576 - 3155486
Alignment:
Q  22 ttttaccttttattatagaaatagcttatacataaaacct-atcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||| |||||  ||||||||||||||||||||| |  || |||||| |||| ||||||||||||||||||| ||||||||||||||||||    
T  3155576 ttttatcttttgctatagaaatagcttatacatacatgcttatcatgataagcgcttgtactataagctgcagataagttgtttatccaaa 3155486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 44863061 - 44863149
Alignment:
Q  24 ttaccttttattatagaaatagcttatacataaa-acctatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||  |||| ||||||||||| |||||  || |||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  44863061 ttacctttttctataaaaatagcttatgcataagcacttatcatgacaagtgcttgtgctataagctgcaaataagttgtttatccaaa 44863149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 44138519 - 44138442
Alignment:
Q  35 tatagaaatagcttatacataaa-acctatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||||| |||||||||||||  |  ||||||| ||||||||||||||| |||||||||||||| ||||||||||||    
T  44138519 tatagaaacagcttatacataagcaagtatcatgataagtgcttgtactaaaagctgcaaataagctgtttatccaaa 44138442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 17204053 - 17204011
Alignment:
Q  69 taagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  17204053 taagtgcttgttctataagctgcaaataagttgtttatccaaa 17204011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 50662842 - 50662919
Alignment:
Q  35 tatagaaatagcttatacataaaacct-atcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||| ||||||||||||||||||  || |||||| ||||  |||||  ||||||||||||||||||||||||||||||    
T  50662842 tataaaaatagcttatacataaacgctcatcatgataagctcttgtgatataagctgcaaataagttgtttatccaaa 50662919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 25904361 - 25904411
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| ||||||||||| |||||| |||||||| |||||||||||||||    
T  25904361 tatcatgataagtgcttgtgctataatctgcaaatgagttgtttatccaaa 25904411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 47119090 - 47119132
Alignment:
Q  69 taagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||||||| ||||||| |||||||||||||||||||||||    
T  47119090 taagtgcttgtgctataagttgcaaataagttgtttatccaaa 47119132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 50681218 - 50681286
Alignment:
Q  44 agcttatacataaaacct-atcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||||||||||  || |||||| ||||| ||||| |||||||||  ||||||||||||||||||||    
T  50681218 agcttatacataaacgcttatcatgataagttcttgtgctataagctataaataagttgtttatccaaa 50681286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 27030 - 27080
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| |||| |||||| |||||||||||||| ||| ||||||||||||    
T  27030 tatcatgataagcgcttgtgctataagctgcaaacaagatgtttatccaaa 27080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 437377 - 437427
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| |||  ||||||| |||||||||||||||||| |||||||||||    
T  437377 tatcatgataaaagcttgtattataagctgcaaataagtcgtttatccaaa 437427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 23319765 - 23319731
Alignment:
Q  77 tgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||||||||||||||||||||| |||||||||    
T  23319765 tgtactataagctgcaaataagttgcttatccaaa 23319731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 42641730 - 42641804
Alignment:
Q  22 ttttaccttttattatagaaatagcttatacataaa-acctatcatgttaagtgcttgtactataagctgcaaat 95  Q
    ||||| ||||| |||| ||||||||||||||||||| || ||||||| ||||||||| |   |||||||||||||    
T  42641730 ttttatcttttgttatggaaatagcttatacataaacacttatcatgataagtgcttatgtaataagctgcaaat 42641804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 111
Target Start/End: Original strand, 45935380 - 45935410
Alignment:
Q  81 ctataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||||||||||||||||||||||||    
T  45935380 ctataagctgcaaataagttgtttatccaaa 45935410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 4212852 - 4212815
Alignment:
Q  74 gcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  4212852 gcttgtgctataagctgaaaataagttgtttatccaaa 4212815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 27330185 - 27330222
Alignment:
Q  74 gcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  27330185 gcttgtgctataagctacaaataagttgtttatccaaa 27330222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 39603587 - 39603628
Alignment:
Q  70 aagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||| ||| |||||||||||||||||| ||||||||||||    
T  39603587 aagtgcctgtgctataagctgcaaataagctgtttatccaaa 39603628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 44797802 - 44797765
Alignment:
Q  74 gcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  44797802 gcttgtgctataagttgcaaataagttgtttatccaaa 44797765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 111
Target Start/End: Complemental strand, 22030120 - 22030092
Alignment:
Q  83 ataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||||||||||||||||||||||    
T  22030120 ataagctgcaaataagttgtttatccaaa 22030092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 22539158 - 22539234
Alignment:
Q  36 atagaaatagcttatacataaaaccta-tcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||| |||||||||||||||  ||  ||||| |||| |||| | |||||| ||||||||||||| ||||||||||    
T  22539158 atagaagtagcttatacataaacgcttgtcatgataagggcttatgctataacctgcaaataagttatttatccaaa 22539234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 33552929 - 33553007
Alignment:
Q  33 attatagaaatagcttatacataaaacct-atcatgttaagtgcttgtactataagctgcaaataagttgtttatccaa 110  Q
    ||||||||||||||||||||||||   || |||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  33552929 attatagaaatagcttatacataagcgcttatcatggtaagtgcttgtgcaataagctgcaaataagttgtttatccaa 33553007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 46139897 - 46139825
Alignment:
Q  40 aaatagcttatacataaa-acctatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||||| ||||  || ||||||| |||||||||||  |||||||||||||||||||||||| |||||    
T  46139897 aaatagcttatagataatcacttatcatgataagtgcttgtgttataagctgcaaataagttgtttaaccaaa 46139825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 18865197 - 18865247
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| |||| | |||| |||||||||||||||||||||||||||||||    
T  18865197 tatcatgataagcgtttgtgctataagctgcaaataagttgtttatccaaa 18865247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 23989615 - 23989673
Alignment:
Q  46 cttatacataa-aacctatcatgttaagtgcttgtactataagctgcaaataagttgtt 103  Q
    ||||||||||| ||| ||||||| |||| || |||||||||||||||||||||||||||    
T  23989615 cttatacataagaacttatcatgataagcgcgtgtactataagctgcaaataagttgtt 23989673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 33266623 - 33266665
Alignment:
Q  69 taagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||||||||||||||||||||| | ||||||||||||    
T  33266623 taagtgcttgtactataagctgcaaatatgatgtttatccaaa 33266665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 21619372 - 21619295
Alignment:
Q  30 tttattatagaaatagcttatacataa-aacctatcatgttaagtgcttgtactataagctgcaaataagttgtttat 106  Q
    |||||||||||||||||||| | ||||   | ||||||| ||||||||||| ||||||||||||||| || |||||||    
T  21619372 tttattatagaaatagcttagagataagtgcttatcatgataagtgcttgtgctataagctgcaaattagatgtttat 21619295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 53
Target Start/End: Original strand, 3802236 - 3802267
Alignment:
Q  22 ttttaccttttattatagaaatagcttataca 53  Q
    ||||||||||||||||||||||||||||||||    
T  3802236 ttttaccttttattatagaaatagcttataca 3802267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 20881732 - 20881815
Alignment:
Q  21 gttttaccttttattatagaaatagcttatacataaaacct-atcatgttaagtgcttgtactataagctgcaaataagttgtt 103  Q
    |||||| |||||  |||||| |||||| |||||||| | || |||||| ||||||||||| |||||| || |||||||||||||    
T  20881732 gttttatcttttgctatagatatagctcatacataagagcttatcatgataagtgcttgtgctataaactacaaataagttgtt 20881815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 43250776 - 43250867
Alignment:
Q  22 ttttaccttttattatagaaatagcttatacataaa-acctatcatgttaagtgcttgtactataagctgcaaat-aagttgtttatccaaa 111  Q
    ||||| ||||| || |||| ||||||||||||||||  | ||||||| |||||||||   |||| |||||||||| ||||||||||||||||    
T  43250776 ttttatcttttgttctagacatagcttatacataaaggcttatcatggtaagtgcttaagctatcagctgcaaataaagttgtttatccaaa 43250867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 11619341 - 11619383
Alignment:
Q  69 taagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||||||| | |||| ||||||||||||||||||||||||    
T  11619341 taagtgcttgtgcaataatctgcaaataagttgtttatccaaa 11619383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 107
Target Start/End: Original strand, 22296364 - 22296398
Alignment:
Q  73 tgcttgtactataagctgcaaataagttgtttatc 107  Q
    ||||||| |||||||||||||||||||||||||||    
T  22296364 tgcttgtgctataagctgcaaataagttgtttatc 22296398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 27863844 - 27863894
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| ||||  ||||| ||||||||| |||||||||||||||||||||    
T  27863844 tatcatgataagcacttgtgctataagctacaaataagttgtttatccaaa 27863894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 28900798 - 28900760
Alignment:
Q  73 tgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  28900798 tgcttgtgttataagctgcaaataagttgtttatccaaa 28900760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 33128680 - 33128630
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| |||||| |||| || ||||||||||||||| ||||||||||||    
T  33128680 tatcatgataagtgtttgtgctgtaagctgcaaataagctgtttatccaaa 33128630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 28702734 - 28702697
Alignment:
Q  21 gttttaccttttattatagaaatagcttatacataaaa 58  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  28702734 gttttatcttttgttatagaaatagcttatacataaaa 28702697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 7612414 - 7612346
Alignment:
Q  40 aaatagcttatacataaaacct-atcatgttaagtgcttgtactataagctgcaaa-taagttgtttat 106  Q
    ||||||||||||||||  | || |||||| ||||||||| | |||||||||||||| ||||||||||||    
T  7612414 aaatagcttatacatatgagcttatcatgataagtgcttatgctataagctgcaaattaagttgtttat 7612346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 111
Target Start/End: Complemental strand, 28210356 - 28210328
Alignment:
Q  83 ataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||||||||||||||||||||||    
T  28210356 ataagctgcaaataagttgtttatccaaa 28210328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 111
Target Start/End: Original strand, 40377997 - 40378025
Alignment:
Q  83 ataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||||||||||||||||||||||    
T  40377997 ataagctgcaaataagttgtttatccaaa 40378025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 26143738 - 26143827
Alignment:
Q  22 ttttaccttttattatagaaatagcttatacataaaacctatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||| |||||  ||||||||||||||||||| ||   |||||||| |||||||||||  ||||| ||||||||||||||||||||||||    
T  26143738 ttttatcttttgctatagaaatagcttatacacaagtgctatcatggtaagtgcttgtgttataaactgcaaataagttgtttatccaaa 26143827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 26626809 - 26626759
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| |||| |||| | |||||||||||||||||||||||||||||||    
T  26626809 tatcatgataagagcttatgctataagctgcaaataagttgtttatccaaa 26626759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 27695734 - 27695784
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| |||||| |||| ||||||||| |||||||||||||||||||||    
T  27695734 tatcatgataagtgtttgtgctataagctacaaataagttgtttatccaaa 27695784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 43570349 - 43570299
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| ||||||||||| |||||||||||||||||| |||||| |||||    
T  43570349 tatcatgataagtgcttgtgctataagctgcaaataagctgtttacccaaa 43570299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 13864623 - 13864588
Alignment:
Q  22 ttttaccttttattatagaaatagcttatacataaa 57  Q
    ||||||||||| ||||||||||||||||||||||||    
T  13864623 ttttaccttttgttatagaaatagcttatacataaa 13864588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 2416270 - 2416196
Alignment:
Q  38 agaaatagcttatacataaa-acctatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| |||||||||||  || || |||| ||||  ||||| |||||||||| ||||||||||||||||||||    
T  2416270 agaaataacttatacataagcacttaacatgataagaacttgtgctataagctgaaaataagttgtttatccaaa 2416196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 15757813 - 15757863
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| |||| |||||| |||||||||| ||||||| ||||||||||||    
T  15757813 tatcatgataagcgcttgtgctataagctgaaaataagctgtttatccaaa 15757863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 111
Target Start/End: Complemental strand, 40835467 - 40835437
Alignment:
Q  81 ctataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||||||||||||||||||||||||    
T  40835467 ctataagctgcaaataagttgtttatccaaa 40835437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 41407224 - 41407174
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| |||| |||||| |||||||||||||| ||| ||||||||||||    
T  41407224 tatcatgataagcgcttgtgctataagctgcaaacaagctgtttatccaaa 41407174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 42457921 - 42457831
Alignment:
Q  22 ttttaccttttattatagaaatagcttatacataaa-acctatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||| |||||| ||||||||||| |||||||||||  | ||||||| || | |||||| ||||||||  ||||||||| ||| |||||||    
T  42457921 ttttatcttttactatagaaatagattatacataaatgcttatcatgataggcgcttgtgctataagccacaaataagtggttaatccaaa 42457831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 111
Target Start/End: Original strand, 7043880 - 7043909
Alignment:
Q  82 tataagctgcaaataagttgtttatccaaa 111  Q
    ||||||||||||||||||||||||||||||    
T  7043880 tataagctgcaaataagttgtttatccaaa 7043909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 111
Target Start/End: Complemental strand, 41449820 - 41449791
Alignment:
Q  82 tataagctgcaaataagttgtttatccaaa 111  Q
    ||||||||||||||||||||||||||||||    
T  41449820 tataagctgcaaataagttgtttatccaaa 41449791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 44589995 - 44589922
Alignment:
Q  35 tatagaaatagcttatacataaa-acctatcatgttaagtgcttgtactataagctgcaaataagttgtttatc 107  Q
    |||||||| | |||||||||||  || ||||||| |||| |||| ||||||||||| |||||| ||||||||||    
T  44589995 tatagaaacaacttatacataagcacttatcatgataagcgcttatactataagctccaaatatgttgtttatc 44589922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 111
Target Start/End: Complemental strand, 9174725 - 9174697
Alignment:
Q  83 ataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||||||||||||||||||||||    
T  9174725 ataagctgcaaataagttgtttatccaaa 9174697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 19608740 - 19608812
Alignment:
Q  40 aaatagcttatacataaaacct-atcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||||||||||   || |||||| || |||||||| |||||||||||||||| | ||| ||||||||    
T  19608740 aaatagcttatacataagtgcttatcatggtatgtgcttgtgctataagctgcaaatatgctgtatatccaaa 19608812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 40279120 - 40279084
Alignment:
Q  75 cttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  40279120 cttgtgctataagctacaaataagttgtttatccaaa 40279084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 41812235 - 41812271
Alignment:
Q  75 cttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  41812235 cttgtgctataaactgcaaataagttgtttatccaaa 41812271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 41880642 - 41880690
Alignment:
Q  64 catgttaagtgcttgtactataagctgcaaa-taagttgtttatccaaa 111  Q
    |||| |||| |||||| |||||||||||||| |||||||||||||||||    
T  41880642 catgataagcgcttgtgctataagctgcaaagtaagttgtttatccaaa 41880690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 32372547 - 32372497
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  32372547 tatcatgataagtgcttgtgctataagctgcaaataagttgtttatccaaa 32372497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 28776930 - 28776858
Alignment:
Q  40 aaatagcttatacataaa-acctatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||||||||||  || ||||||| |||||||||   |||||||||||||||||||||||||||||||    
T  28776930 aaatagcttatacataagcacttatcatgataagtgcttaggctataagctgcaaataagttgtttatccaaa 28776858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 24030549 - 24030599
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||||||||    
T  24030549 tatcatgataagtgcttgtgctataagctgcaaataagctgtttatccaaa 24030599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 40426685 - 40426635
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| ||||||||||| ||||||||||||||| |||||||||||||||    
T  40426685 tatcatgataagtgcttgtgctataagctgcaaatgagttgtttatccaaa 40426635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 3520354 - 3520304
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||||  |||||||||| |||||||||| ||||||||||||||||||||    
T  3520354 tatcatgacaagtgcttgtgctataagctgaaaataagttgtttatccaaa 3520304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 34736663 - 34736713
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| |||||| |||| |||||||||||| ||||||||||||||||||    
T  34736663 tatcatggtaagtgtttgtgctataagctgcagataagttgtttatccaaa 34736713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 7984911 - 7984868
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgttt 104  Q
    ||||||| |||| || ||||||||||||||||||||||||||||    
T  7984911 tatcatgataagcgcatgtactataagctgcaaataagttgttt 7984868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 32703585 - 32703628
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgttt 104  Q
    ||||||| ||| ||||||| ||||||||||||||||||||||||    
T  32703585 tatcatgataaatgcttgtgctataagctgcaaataagttgttt 32703628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 9202861 - 9202935
Alignment:
Q  38 agaaatagcttatacataaa-acctatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||||||| ||||  || ||||||| |||   ||||| |||||||||||||||||| ||||||||||||    
T  9202861 agaaatagcttatatataagcacttatcatgataaacacttgtgctataagctgcaaataagatgtttatccaaa 9202935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 11054159 - 11054125
Alignment:
Q  22 ttttaccttttattatagaaatagcttatacataa 56  Q
    ||||| |||||||||||||||||||||||||||||    
T  11054159 ttttatcttttattatagaaatagcttatacataa 11054125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 13697906 - 13697956
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| ||| ||||| |  ||||||||||||||||||||||||||||||    
T  13697906 tatcatgataaatgcttatgttataagctgcaaataagttgtttatccaaa 13697956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 111
Target Start/End: Original strand, 12433538 - 12433567
Alignment:
Q  82 tataagctgcaaataagttgtttatccaaa 111  Q
    ||||||||||||||||||||||||||||||    
T  12433538 tataagctgcaaataagttgtttatccaaa 12433567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 3735652 - 3735688
Alignment:
Q  75 cttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  3735652 cttgtgctataagctgcaaataggttgtttatccaaa 3735688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 8130314 - 8130282
Alignment:
Q  74 gcttgtactataagctgcaaataagttgtttat 106  Q
    |||||||||||||||||||||||||||| ||||    
T  8130314 gcttgtactataagctgcaaataagttgcttat 8130282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 39105424 - 39105356
Alignment:
Q  35 tatagaaatagcttatacataaaacct-atcatgttaagtgcttgtactataagctgcaaataagttgt 102  Q
    ||||||||||||||||||||||   || |||||| ||||  ||| | ||||||||||||||||||||||    
T  39105424 tatagaaatagcttatacataagcgcttatcatgataagcacttatgctataagctgcaaataagttgt 39105356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 51688646 - 51688578
Alignment:
Q  44 agcttatacataaa-acctatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||||| ||||| || ||||||| ||||  |||||||||||||||||||||||||||||||||||||    
T  51688646 agcttatatataaacacttatcatgataagcacttgtactataagctgcaaataagttgtttatccaaa 51688578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 45855779 - 45855734
Alignment:
Q  66 tgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  45855779 tgttaagtgcttgtgctataagctgcaaataagttggttatccaaa 45855734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 27820477 - 27820527
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| |||| |||| | |||||||||||||||||||||||||||||||    
T  27820477 tatcatgataagcgcttatgctataagctgcaaataagttgtttatccaaa 27820527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 27970418 - 27970460
Alignment:
Q  69 taagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||||| | |||||||||||||||||||||||||||||||    
T  27970418 taagtgcttctgctataagctgcaaataagttgtttatccaaa 27970460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 29904683 - 29904633
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| |||| ||||| ||||||||||||| ||||||||||||||||||    
T  29904683 tatcatgataagcgcttgaactataagctgcatataagttgtttatccaaa 29904633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 46423195 - 46423153
Alignment:
Q  69 taagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||||  ||||||||||||||||||||||||||||||    
T  46423195 taagtgcttgtgttataagctgcaaataagttgtttatccaaa 46423153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 47498980 - 47499030
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| ||||  ||||| |||||||||||||||||||||||||||||||    
T  47498980 tatcatgataagcacttgtgctataagctgcaaataagttgtttatccaaa 47499030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 5894274 - 5894350
Alignment:
Q  36 atagaaatagcttatacataaaacct-atcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||||||||||||||   || |||||| ||||  ||||| ||||||||| |||||||| ||||||||||||    
T  5894274 atagaaatagcttatacataagcgcttatcatgataagcacttgtgctataagcttcaaataagctgtttatccaaa 5894350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 17727250 - 17727292
Alignment:
Q  69 taagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||||||| ||||||||| || ||||||||||||||||||    
T  17727250 taagtgcttgtgctataagctacacataagttgtttatccaaa 17727292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 37593778 - 37593856
Alignment:
Q  34 ttatagaaatagcttatacataaa-acctatcatgttaagtgcttgtactataagctgcaaa-taagttgtttatccaa 110  Q
    ||||||||||| |||||||||||| || |||| || |||| |||| | || ||||||||||| ||||||||||||||||    
T  37593778 ttatagaaataccttatacataaacacttatcgtgataagcgcttttgctttaagctgcaaattaagttgtttatccaa 37593856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 38247376 - 38247327
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||||||    
T  38247376 tatcatgataagtgcttgtgctataagctgcaaat-agctgtttatccaaa 38247327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 41195349 - 41195391
Alignment:
Q  69 taagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||| |||||| |||||||||||||||||||| ||||||||||    
T  41195349 taagcgcttgtgctataagctgcaaataagttatttatccaaa 41195391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 1432504 - 1432455
Alignment:
Q  6 aaacaattaaaatctgttttaccttttattatagaaatagcttatacata 55  Q
    |||||||| || ||| ||||| |||||| |||||||||||||||||||||    
T  1432504 aaacaattgaactctattttatcttttactatagaaatagcttatacata 1432455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 27976299 - 27976266
Alignment:
Q  78 gtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||||||||| ||||||||||||||||||||    
T  27976299 gtactataagctgtaaataagttgtttatccaaa 27976266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 111
Target Start/End: Complemental strand, 39906554 - 39906525
Alignment:
Q  82 tataagctgcaaataagttgtttatccaaa 111  Q
    ||||||||||||||||||||||||||||||    
T  39906554 tataagctgcaaataagttgtttatccaaa 39906525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 836491 - 836519
Alignment:
Q  82 tataagctgcaaataagttgtttatccaa 110  Q
    |||||||||||||||||||||||||||||    
T  836491 tataagctgcaaataagttgtttatccaa 836519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 111
Target Start/End: Original strand, 3887760 - 3887788
Alignment:
Q  83 ataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||||||||||||||||||||||    
T  3887760 ataagctgcaaataagttgtttatccaaa 3887788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 33541869 - 33541905
Alignment:
Q  75 cttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  33541869 cttgtgctataaactgcaaataagttgtttatccaaa 33541905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 111
Target Start/End: Complemental strand, 37473300 - 37473272
Alignment:
Q  83 ataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||||||||||||||||||||||    
T  37473300 ataagctgcaaataagttgtttatccaaa 37473272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 38189694 - 38189658
Alignment:
Q  75 cttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  38189694 cttgtgctataaactgcaaataagttgtttatccaaa 38189658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 9956949 - 9956998
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaa 110  Q
    ||||||| ||||||||||| ||||||||| ||||||||||||||||||||    
T  9956949 tatcatgataagtgcttgtgctataagctacaaataagttgtttatccaa 9956998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 14956442 - 14956492
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| |||| | |||| |||||||||||||||||||||||||||||||    
T  14956442 tatcatgataagcgattgtgctataagctgcaaataagttgtttatccaaa 14956492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 26215469 - 26215379
Alignment:
Q  22 ttttaccttttattatagaaatagcttatacataa-aacctatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||| ||||| |||||||||||||||||||||||   | ||||||  |||| ||| || |||||||||| ||||||||||||||| ||||    
T  26215469 ttttatcttttgttatagaaatagcttatacataagcgcttatcattataagcgctcgtgctataagctgaaaataagttgtttatacaaa 26215379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 4558771 - 4558736
Alignment:
Q  22 ttttaccttttattatagaaatagcttatacataaa 57  Q
    ||||| ||||||||||||||||||||||||||||||    
T  4558771 ttttatcttttattatagaaatagcttatacataaa 4558736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 7646179 - 7646145
Alignment:
Q  22 ttttaccttttattatagaaatagcttatacataa 56  Q
    ||||||||||| |||||||||||||||||||||||    
T  7646179 ttttaccttttcttatagaaatagcttatacataa 7646145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 22790555 - 22790513
Alignment:
Q  69 taagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||  ||||||||||| ||||||||||||||||||||    
T  22790555 taagtgcttacactataagctgtaaataagttgtttatccaaa 22790513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 111
Target Start/End: Original strand, 29819047 - 29819077
Alignment:
Q  81 ctataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||||||||||||||||||||||||    
T  29819047 ctataagctgcaaataagttgtttatccaaa 29819077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 36963492 - 36963542
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| |||| |||||| ||||||||||||||||| ||||||| |||||    
T  36963492 tatcatgataagcgcttgtgctataagctgcaaataaattgtttacccaaa 36963542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 38750281 - 38750231
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| ||||||| ||||||  ||||| |||||||||||||||||||||    
T  38750281 tatcatgataagtgcatgtacttcaagcttcaaataagttgtttatccaaa 38750231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 40981045 - 40981003
Alignment:
Q  69 taagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||| |||||| |||||||||||||||||| ||||||||||||    
T  40981045 taagcgcttgtgctataagctgcaaataagctgtttatccaaa 40981003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 111
Target Start/End: Complemental strand, 27752464 - 27752435
Alignment:
Q  82 tataagctgcaaataagttgtttatccaaa 111  Q
    ||||||||||||||||||||||||||||||    
T  27752464 tataagctgcaaataagttgtttatccaaa 27752435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 111
Target Start/End: Complemental strand, 34236074 - 34236045
Alignment:
Q  82 tataagctgcaaataagttgtttatccaaa 111  Q
    ||||||||||||||||||||||||||||||    
T  34236074 tataagctgcaaataagttgtttatccaaa 34236045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 1470953 - 1470985
Alignment:
Q  22 ttttaccttttattatagaaatagcttatacat 54  Q
    ||||| |||||||||||||||||||||||||||    
T  1470953 ttttatcttttattatagaaatagcttatacat 1470985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 8407343 - 8407291
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaaaa 113  Q
    ||||||| ||| || |||| || ||||||| ||||||||||||||||||||||    
T  8407343 tatcatgataattgtttgtgctttaagctgaaaataagttgtttatccaaaaa 8407291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 402651 - 402721
Alignment:
Q  35 tatagaaatagcttatacataaaacct-atcatgttaagtgcttgtactataagctgcaaataagttgttt 104  Q
    ||||||||||||||||||||||  ||| |||||| ||||  ||||| |||| |||||||||||||||||||    
T  402651 tatagaaatagcttatacataagcccttatcatgataagcacttgtgctatgagctgcaaataagttgttt 402721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 47132300 - 47132250
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| ||||||||||| ||||||| || ||||||||||||||||||||    
T  47132300 tatcatgataagtgcttgtgctataaggtgaaaataagttgtttatccaaa 47132250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 52597660 - 52597591
Alignment:
Q  23 tttaccttttattatagaaatagcttatacataaaacctatcatgttaagtgcttgtactataagctgca 92  Q
    |||| |||||| ||| ||||||||||||||||||   |||||||| |||||||||||  |||||||||||    
T  52597660 tttatcttttactatggaaatagcttatacataagtgctatcatgataagtgcttgtgttataagctgca 52597591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 849595 - 849555
Alignment:
Q  71 agtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||| |||| |||||||||||||||||||||||||||||||    
T  849595 agtgtttgtgctataagctgcaaataagttgtttatccaaa 849555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 30365679 - 30365731
Alignment:
Q  62 atcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaaaaa 114  Q
    |||||| |||||| |||| |||||||||  |||||||||||||||||||||||    
T  30365679 atcatgataagtgtttgtgctataagctataaataagttgtttatccaaaaaa 30365731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 36507238 - 36507278
Alignment:
Q  72 gtgcttgtactataagctgcaaataagttgtttatccaaaa 112  Q
    |||||||| ||||||||||||||||||||||| ||||||||    
T  36507238 gtgcttgtgctataagctgcaaataagttgttcatccaaaa 36507278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 24085465 - 24085512
Alignment:
Q  64 catgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||| |||||| ||||| | ||||||||||||||||||||||||||||    
T  24085465 catgataagtgtttgtattctaagctgcaaataagttgtttatccaaa 24085512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 2304338 - 2304372
Alignment:
Q  22 ttttaccttttattatagaaatagcttatacataa 56  Q
    ||||| |||||||||||||||||||||||||||||    
T  2304338 ttttatcttttattatagaaatagcttatacataa 2304372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 3845717 - 3845759
Alignment:
Q  69 taagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||||||| |||| | ||||||||||||||||||||||||    
T  3845717 taagtgcttgtgctatgaactgcaaataagttgtttatccaaa 3845759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 28240259 - 28240213
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatc 107  Q
    ||||||| |||| |||||| |||||||||||| ||||||||||||||    
T  28240259 tatcatgataagcgcttgtgctataagctgcagataagttgtttatc 28240213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 30956773 - 30956823
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| ||||  ||||| |||||||||||||||||| ||||||||||||    
T  30956773 tatcatgataagcccttgtgctataagctgcaaataagctgtttatccaaa 30956823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 30972585 - 30972635
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| ||||  ||||| |||||||||||||||||| ||||||||||||    
T  30972585 tatcatgataagcccttgtgctataagctgcaaataagctgtttatccaaa 30972635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 34034094 - 34034044
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| |||| || ||| |||||||||| ||||||||||||||||||||    
T  34034094 tatcatgataagcgcctgttctataagctgaaaataagttgtttatccaaa 34034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 34235229 - 34235263
Alignment:
Q  77 tgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||||||||| |||||||||||||||||||||    
T  34235229 tgtactataagctacaaataagttgtttatccaaa 34235263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 34610943 - 34610993
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| |||| ||||||  ||||||||||| ||||||||||||||||||    
T  34610943 tatcatgataagcgcttgtgttataagctgcagataagttgtttatccaaa 34610993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 35959603 - 35959653
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||| |||| ||||||  ||||||||||||||||| ||||||||||||    
T  35959603 tatcatgataagagcttgtgatataagctgcaaataagctgtttatccaaa 35959653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 111
Target Start/End: Original strand, 46886854 - 46886884
Alignment:
Q  81 ctataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||||||||||||||||||||||||    
T  46886854 ctataagctgcaaataagttgtttatccaaa 46886884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 50946409 - 50946451
Alignment:
Q  81 ctataagctgcaaataagttgtttatccaaaaaattcctatat 123  Q
    |||||||||||||||||||||| |||||||| ||| |||||||    
T  50946409 ctataagctgcaaataagttgtatatccaaataatgcctatat 50946451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 111
Target Start/End: Complemental strand, 944395 - 944366
Alignment:
Q  82 tataagctgcaaataagttgtttatccaaa 111  Q
    ||||||||||||||||||||||||||||||    
T  944395 tataagctgcaaataagttgtttatccaaa 944366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 22203377 - 22203340
Alignment:
Q  69 taagtgcttgtactataagctgcaaataagttgtttat 106  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  22203377 taagagcttgtactataagctgcaaataagctgtttat 22203340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 39122849 - 39122878
Alignment:
Q  74 gcttgtactataagctgcaaataagttgtt 103  Q
    ||||||||||||||||||||||||||||||    
T  39122849 gcttgtactataagctgcaaataagttgtt 39122878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 27384205 - 27384241
Alignment:
Q  70 aagtgcttgtactataagctgcaaataagttgtttat 106  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  27384205 aagtgcttgtagtataagctccaaataagttgtttat 27384241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 33880640 - 33880668
Alignment:
Q  22 ttttaccttttattatagaaatagcttat 50  Q
    |||||||||||||||||||||||||||||    
T  33880640 ttttaccttttattatagaaatagcttat 33880668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 46407542 - 46407506
Alignment:
Q  75 cttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||||||||||||||||| |||||| |||||||||    
T  46407542 cttgtactataagctgcaaaaaagttggttatccaaa 46407506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 47249605 - 47249653
Alignment:
Q  61 tatcatgttaagtgcttgtactataagctgcaaataagttgtttatcca 109  Q
    ||||||| |||||||||||  ||||||||||||||||| | ||||||||    
T  47249605 tatcatgataagtgcttgtgttataagctgcaaataagctatttatcca 47249653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 35069512 - 35069439
Alignment:
Q  35 tatagaaatagcttatacataaa-acctatcatgttaagtgcttgtactataagctgcaaataagttgtttatc 107  Q
    |||| ||||||||||| |||||  || ||||||| |||  |||||| |||||||||||||||||||||||||||    
T  35069512 tatataaatagcttatgcataagcacttatcatgataaacgcttgtgctataagctgcaaataagttgtttatc 35069439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 10645481 - 10645516
Alignment:
Q  76 ttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||| |||||||||||||||||||||||||||||||    
T  10645481 ttgtgctataagctgcaaataagttgtttatccaaa 10645516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 2514675 - 2514641
Alignment:
Q  22 ttttaccttttattatagaaatagcttatacataa 56  Q
    ||||| |||||||||||||||||||||||||||||    
T  2514675 ttttatcttttattatagaaatagcttatacataa 2514641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 6538432 - 6538390
Alignment:
Q  69 taagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||||||||| |||||||||||||||||| | ||||||||||    
T  6538432 taagtgcttgtgctataagctgcaaataagctatttatccaaa 6538390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 9632819 - 9632785
Alignment:
Q  76 ttgtactataagctgcaaataagttgtttatccaa 110  Q
    |||| ||||||||||||||||||||||||||||||    
T  9632819 ttgtgctataagctgcaaataagttgtttatccaa 9632785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 781358 - 781326
Alignment:
Q  22 ttttaccttttattatagaaatagcttatacat 54  Q
    ||||| |||||||||||||||||||||||||||    
T  781358 ttttatcttttattatagaaatagcttatacat 781326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 10616889 - 10616917
Alignment:
Q  28 cttttattatagaaatagcttatacataa 56  Q
    |||||||||||||||||||||||||||||    
T  10616889 cttttattatagaaatagcttatacataa 10616917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 34430641 - 34430593
Alignment:
Q  59 cctatcatgttaagtgcttgtactataagctgcaaataagttgtttatc 107  Q
    ||||||||| ||||  ||||| |||||||||||||||||| ||||||||    
T  34430641 cctatcatgataagcacttgtgctataagctgcaaataagatgtttatc 34430593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 158022 - 157980
Alignment:
Q  69 taagtgcttgtactataagctgcaaataagttgtttatccaaa 111  Q
    |||||| |||| |||||||||||||||||| ||||||||||||    
T  158022 taagtgtttgtgctataagctgcaaataagctgtttatccaaa 157980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 58513 - 58477
Alignment:
Q  75 cttgtactataagctgcaaataagttgtttatccaaa 111  Q
    ||||| || ||||||||||||||||||||||||||||    
T  58513 cttgtgctctaagctgcaaataagttgtttatccaaa 58477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University