View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_53 (Length: 221)
Name: NF15342_low_53
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_53 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 490382 - 490162
Alignment:
| Q |
1 |
caaatccaaataagggataaataaaaagccccttaacttgaacattgttcattatnnnnnnnnnnnnnnnnnnnnntcataagtttgaaagtttcaataa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
490382 |
caaatccaaataagggataaataaaaagccccttaacttgaacattgttcaatataaaaaacaaaagaaaagaaaatcataagtttgaaagtttcaataa |
490283 |
T |
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| Q |
101 |
tcttcatcctatgctcagaatatatactgaacaaaggaccattttgaagaagtaggccatggtatttgaatcacaaccatgaactctttatattcaaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
490282 |
tcttcatcctatgctcagaatatatactgaacaaaggaccattttgaagaactaggccatggtacttgaatcacaaccatgaactctttatattcaaaat |
490183 |
T |
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| Q |
201 |
caacttctttgccatcaattc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
490182 |
caacttctttgccatcaattc |
490162 |
T |
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