View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_55 (Length: 204)
Name: NF15342_low_55
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 4e-77; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 36 - 189
Target Start/End: Original strand, 37582186 - 37582339
Alignment:
| Q |
36 |
acaatagtgattcatcacttgcatattcctttgttgttccaccaaacaccacaaaatcgaaaacttcctacgcgttaacagctgactgtagttgttcaat |
135 |
Q |
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| T |
37582186 |
acaatagtgattcatcacttgcatattcctttgttgttccaccaaacaccacaaaatcgaaaacttcctacgcgttaacagctgactgtagttgttcaag |
37582285 |
T |
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| Q |
136 |
gcttttacctttggtttctggaactactaaaacttataaataatatagctagtg |
189 |
Q |
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| T |
37582286 |
gcttttaccttcggtttctggaactactaaaacttataaataatatagctagtg |
37582339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 62 - 189
Target Start/End: Original strand, 37588511 - 37588636
Alignment:
| Q |
62 |
tcctttgttgttccaccaaacaccacaaaatcgaaaacttcctacgcgttaacagctgactgtagttgttcaatgcttttacctttggtttctggaacta |
161 |
Q |
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| T |
37588511 |
tcctttgttgtttcaccaaacactgcaaa-tcgcaaacttcctacgcgttgatggctgactgtaattgttcaaggcttttacctttggtttctggaacta |
37588609 |
T |
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| Q |
162 |
ctaaaacttataaataatatagctagtg |
189 |
Q |
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| T |
37588610 |
ctaaaac-tataaataatatagctagtg |
37588636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 37465634 - 37465535
Alignment:
| Q |
89 |
aaatcgaaaacttcctacgcgttaacagctgactgtagttgttcaatgcttttacctttggtttctggaactactaaaacttataaataatatagctagt |
188 |
Q |
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| T |
37465634 |
aaatcgcaaacttcctacgcgttaatggctgcctgtaattgttcaaggcttttacctttggtttctgggactactacagc-tataaataatatagccagt |
37465536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 6776576 - 6776661
Alignment:
| Q |
98 |
acttcctacgcgttaacagctgactgtagttgttcaatgcttttacctttggtttctggaactactaaaacttataaataatatagc |
184 |
Q |
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|||||||||||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
6776576 |
acttcctacgcgttaatggctgcctgtaattgttcaaggcttttacctttggtttctggaactactgcaac-tataaataatatagc |
6776661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 11500951 - 11501042
Alignment:
| Q |
96 |
aaacttcctacgcgttaacagctgactgtagttgttcaatgcttttacctttggtttctggaactactaaaacttataaataatatagctagtg |
189 |
Q |
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| T |
11500951 |
aaacatcctacgcgttaatggctgcctgcaattgtttaaggcttttacctttgg-ttctgggactactacaac-tataaataatatagccagtg |
11501042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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