View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_6 (Length: 628)
Name: NF15342_low_6
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 6 - 215
Target Start/End: Original strand, 1795666 - 1795872
Alignment:
| Q |
6 |
aatgagttgggttggtttcttttaagaaaatctttatataattaaaaggactcaaattcaatttaatgtatgaaagtgaatgtgatttaattaatttttg |
105 |
Q |
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| T |
1795666 |
aatgagttgggttggtttcttttaagaaaatctttatataattaaaaggactcaaattcaatttaatgtatgaaagtgaatgtgattt---taatttttg |
1795762 |
T |
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| Q |
106 |
caagaagtagttagaatcacgctatctcattaatcttgatttgatattagccaccaatatttcaataacatactagggtttacctttggcatcttttggt |
205 |
Q |
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| T |
1795763 |
caagaagtagttagaatcacgctatctcattaatcttgatttgatattagccaccaatatttcaataacatactagggtttacctttggcatcttttggt |
1795862 |
T |
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| Q |
206 |
gagaccatca |
215 |
Q |
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|||||||||| |
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| T |
1795863 |
gagaccatca |
1795872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 302 - 492
Target Start/End: Original strand, 1795958 - 1796148
Alignment:
| Q |
302 |
gatagaaaataaaatcaagaagagattttaactagagtcgaatgaactcaacatctgtgatatccgttaagagaatagatgacatgtcaaatgattttat |
401 |
Q |
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| T |
1795958 |
gatagaaaataaaaccaaaaaaagattttaactagagtcgaatgaactcaacgtctgtgatatccgttaaaagaatagataacatatcaacggactttat |
1796057 |
T |
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| Q |
402 |
ggaagacaacaaaataatcatcacttagagcacttttcttaactagatagaaaatgaactccagcatcaccctcacgcaaaatgtgttgaa |
492 |
Q |
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| T |
1796058 |
ggaagacaacaaaattattatcacttagagcacttttcttaactaaatagaaaatgaattgcagcattaccctcacgcaaaatgtgttgaa |
1796148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 517 - 611
Target Start/End: Original strand, 1796146 - 1796240
Alignment:
| Q |
517 |
gaagctattgtttgatagctcatatcacatttccatatttgtaaaacacattcaaacctttttaaacaaggtcaaccttcctaagtgtaatcata |
611 |
Q |
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| T |
1796146 |
gaagctattgtttgatagctcatatcacatttccatatttgtaaaacacattcaaacctttttaaacaaggtcaaacttcctaagtgtaatcata |
1796240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 470 - 593
Target Start/End: Original strand, 11144734 - 11144857
Alignment:
| Q |
470 |
accctcacgcaaaatgtgttgaaaattaatcactcaatctttaagcagaagctattgtttgatagctcatatcacatttccatatttgtaaaacacattc |
569 |
Q |
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| T |
11144734 |
acccttacgcaaagtgtgttgcaaattaattacccaatctctaaacataagctattaattgatagttcatatcaaattttcatatttgtcaaacatattc |
11144833 |
T |
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| Q |
570 |
aaacctttttaaacaaggtcaacc |
593 |
Q |
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| T |
11144834 |
aaacctttctaaatatggtcaacc |
11144857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 472 - 593
Target Start/End: Original strand, 11392198 - 11392316
Alignment:
| Q |
472 |
cctcacgcaaaatgtgttgaaaattaatcactcaatctttaagcagaagctattgtttgatagctcatatcacatttccatatttgtaaaacacattcaa |
571 |
Q |
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||||| ||||| ||||||| ||| ||| ||| |||| | |||||||||| ||| || ||||| ||||||| |||||||||||||| ||||| | |||| |
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| T |
11392198 |
cctcatgcaaagtgtgttgcaaagtaaccacccaatttctaagcagaag---ttgcttaatagcccatatcaaatttccatatttgtgaaacaaaatcaa |
11392294 |
T |
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| Q |
572 |
acctttttaaacaaggtcaacc |
593 |
Q |
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| T |
11392295 |
acctttctaaacaaggtcaacc |
11392316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 577
Target Start/End: Complemental strand, 7685010 - 7684914
Alignment:
| Q |
478 |
gcaaaatgtgttgaaaattaatcactcaatctttaagcagaagctattgtttgatagctcatatcacatttccatatttgtaaaacacattcaaaccttt |
577 |
Q |
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| T |
7685010 |
gcaaagtgttttgcaaattaaccattcaatctctaagcagaa---attgcttgatagtccatataaaattttcatctttgtgaaacacattcaaaccttt |
7684914 |
T |
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