View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_7 (Length: 605)
Name: NF15342_low_7
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 11 - 591
Target Start/End: Original strand, 27295697 - 27296262
Alignment:
| Q |
11 |
gaacctgtgaaacttgtatgtttgagaatagtactccttgtactgaacctgatccaccctgcataattttttatttaatttgttagagatcaaatttttc |
110 |
Q |
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| T |
27295697 |
gaacctgtgaaacttgtatgtttgagaatagtactccttgtactgaacctgatccaccctgcataattttttatttaatttgttagagatcaaatttttc |
27295796 |
T |
|
| Q |
111 |
attcaatttgatgaaggtatttggattgaatgagagctttgcagcatttgattgaatcataattatttggctttgagagaagattcaattatcggtatga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27295797 |
attcaatttgatgaaggtatttggattgaatgagagctttgcagcatttgattgaatcataattatttggctttgagagaagattcaattatcggtatga |
27295896 |
T |
|
| Q |
211 |
aatgattttgaagttaaattttctgataagcttgatgaacatataggaatcttttttacctgccatgttttgattctgacaccattcattgtgttatgca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27295897 |
aatgattttgaagttaaattttctgataagcttgatgaacatataggaatcttttttacctgccatgttttgattctgacaccattcattgtgttatgca |
27295996 |
T |
|
| Q |
311 |
tgttgacatccctgacagtgatgtttgagacacaggctctagtattatcctttcctagacctccgatgctgattccatgccctggtccacagtcgacatt |
410 |
Q |
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| T |
27295997 |
tgttgacatccctgacagtgatgtttgagacacaggctctagtattatcctttcctagacctccgatgctgattccatgccctggtccacagtcgacatt |
27296096 |
T |
|
| Q |
411 |
gtgtacgtatacgtttgagcatccagtttgtatggaaatacaatcatctcctgcataacagttaagaaaagttcaaaacatggagttctgcatggactag |
510 |
Q |
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| T |
27296097 |
gtgtacgtatacatttgagcatccagtttgtatagaaatacaatcatctcctgcataatag-taaaaaaagttcaaa-------------cctggccta- |
27296181 |
T |
|
| Q |
511 |
ttaccaactgttgtttcgataaatcgaaatgtccaataatttatccgtaattgaaatattaccgcaagccatagtactttt |
591 |
Q |
| |
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| T |
27296182 |
ataccaactgttgtttggataaatagaaatgtgcaataatttatccgtaattgaaatattaccgcaagccatagtactttt |
27296262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 265 - 467
Target Start/End: Complemental strand, 14738722 - 14738520
Alignment:
| Q |
265 |
tttacctgccatgttttgattctgacaccattcattgtgttatgcatgttgacatccctgacagtgatgtttgagacacaggctctagtattatcctttc |
364 |
Q |
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||||||||||||||||||||||| ||||||||||||| || || ||||||||||| |||||||| |||||||||||||||||||| || ||||| |||| |
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| T |
14738722 |
tttacctgccatgttttgattctaacaccattcattgagtcgtgtatgttgacatctctgacagtaatgtttgagacacaggctctggtgttatcttttc |
14738623 |
T |
|
| Q |
365 |
ctagacctccgatgctgattccatgccctggtccacagtcgacattgtgtacgtatacgtttgagcatccagtttgtatggaaatacaatcatctcctgc |
464 |
Q |
| |
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||| || ||| |||||||||||||| || || ||||||| |||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||| |
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| T |
14738622 |
ctaaacttccaatgctgattccatgtcccggaccacagttgacattgtgtacatatacatttgagcatccagtttgtatagaaatgcaatcatctcctgc |
14738523 |
T |
|
| Q |
465 |
ata |
467 |
Q |
| |
|
||| |
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|
| T |
14738522 |
ata |
14738520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 14739074 - 14739019
Alignment:
| Q |
18 |
tgaaacttgtatgtttgagaatagtactccttgtactgaacctgatccaccctgca |
73 |
Q |
| |
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||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||| |
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| T |
14739074 |
tgaaacttgtatgtttgagaataatactccctgtactgaaccagatccaccctgca |
14739019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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