View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15342_low_8 (Length: 553)
Name: NF15342_low_8
Description: NF15342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15342_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 177 - 397
Target Start/End: Original strand, 20551510 - 20551732
Alignment:
| Q |
177 |
gattcatttcaaataaataacccagtaaatatcatttatagattatataagcaatcatttaaccaatacttatcatcttaagtaaatagtgtatagcttc |
276 |
Q |
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| T |
20551510 |
gattcatttcaaataaataatccagtaaatatcatttatagattatataagcaatcatttaaccaatacttatcatcttaagtaaatagtgca--gcttc |
20551607 |
T |
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| Q |
277 |
cataagaagcctaatg----atttggtataaaagaaacacataattaaaaacctaaacatttgtgatctgaaagaatgaagaacaaaccatccaaatcaa |
372 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20551608 |
cataagaagcctaatgaatgatttggtataaaagaaacacataattaaaaacctaaacatttgtgatctgaaagaatgaagaacaaaccatccaaatcaa |
20551707 |
T |
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| Q |
373 |
atgcaacaacaatttcaggagatag |
397 |
Q |
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| T |
20551708 |
atgcaacaacaatttcaggagatag |
20551732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 20551352 - 20551441
Alignment:
| Q |
19 |
aaaaagagcaacagcaatagatttcataaacaagcttgaaattgagaaaagtaaagtaaggatgatgcaaagtactcaacaattgataat |
108 |
Q |
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| T |
20551352 |
aaaaagagcaacagcaatagatttcataaacaagcttgaaattgagaaaagtaaagtaaggatgatgcaaagtactcaacaattgataat |
20551441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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