View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15343_high_14 (Length: 370)

Name: NF15343_high_14
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15343_high_14
NF15343_high_14
[»] chr3 (3 HSPs)
chr3 (269-357)||(34465447-34465535)
chr3 (23-105)||(34465193-34465276)
chr3 (274-349)||(34481593-34481669)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 269 - 357
Target Start/End: Original strand, 34465447 - 34465535
Alignment:
Q  269 cgttaatttaataaactatttttactgaataaattaatatccttttttcaatggaaaatttgcaaaaataataccctaccttcatctca 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||    
T  34465447 cgttaatttaataaactatttttactgaataaattaatatccttttttcaatggcaaatttggaaaaataataccctaccttcctctca 34465535  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 34465193 - 34465276
Alignment:
Q  23 ctattatcaaataatcgagtttttaaaataattaaaaccatagccatattttttg-agtcataattaaaaggtaaagatgaaag 105  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  34465193 ctattatcaaataatcgagtttttaaaataattaaaaccattgccatattttttgaagtcataattaaaaggtaaagatgaaag 34465276  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 349
Target Start/End: Original strand, 34481593 - 34481669
Alignment:
Q  274 atttaataaac-tatttttactgaataaattaatatccttttttcaatggaaaatttgcaaaaataataccctacct 349  Q
    ||||||||||| | |||||||||| |||||||||||||| |||||||||| || |||| ||||||||||| ||||||    
T  34481593 atttaataaacctttttttactgactaaattaatatcctcttttcaatggcaactttggaaaaataatactctacct 34481669  T

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