View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15343_high_2 (Length: 732)
Name: NF15343_high_2
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15343_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 638; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 1 - 715
Target Start/End: Original strand, 31629188 - 31629894
Alignment:
| Q |
1 |
ttttgcttcctttcttactttttatggtaagaattatttgttaatgatctaattatcaaatcacgtaattggaatcaaaatgacatgtgttacggacatt |
100 |
Q |
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| T |
31629188 |
ttttgtttcctttcttactttttatgataagaattatttgttaatgatctaattatcaaattacgtaattggaatcaaaatgacatgtgttacggacatt |
31629287 |
T |
|
| Q |
101 |
tcttgttgaaagagtgtccggtgtcctgcatgtgtcaagagtccaaaatagacaccacatcatcactactaatattcttcaataaaaattgtatcatttc |
200 |
Q |
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| T |
31629288 |
tcttgttgaaagagtgtccggtgtccttcatgtgtcaagagtccaaaatagacaccacatcatcactactaattttcttcaataaaaattgtatcatttc |
31629387 |
T |
|
| Q |
201 |
aagatattacaaattgaagttactttagtgaaattacatatgtttgatttctgtctttgctttcaagcctcactttgactaggagtcatccaaagtaact |
300 |
Q |
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| T |
31629388 |
aagatattacaaattgaagttactttagtgaaattacatatgtttgatttctgtctttgctttcaagcctcactttga--------catccaaagtaact |
31629479 |
T |
|
| Q |
301 |
tctatattggattgacaattttacaccgactttacttcaaacttcccttgagaatgagattgtctaaatataaatcacttatttcaaaatcgattataac |
400 |
Q |
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| T |
31629480 |
tctatattggattgacaattttacaccgactttacttcaaacttcccttgagaatgagattgtctaaatataaatcacttatttcaaaatcgattataac |
31629579 |
T |
|
| Q |
401 |
caaatgaattatgttccaaatcacaaaatatttacccaaacacacctaatcaaaccaaactagctatttgtggtttaagaaatgtttcaatatattatca |
500 |
Q |
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| T |
31629580 |
caaatgaattatgtcccaaatcacaaaatatttacccaaacacacctaatcaaaccaaactagctatttgtggtttaagaaatgtttcaatatattatca |
31629679 |
T |
|
| Q |
501 |
atgagggaaacaaatnnnnnnnntaaacacatgctaagatggattgatcattgatgtctttgtttaattaaagttcaaggttaattccctaatatatact |
600 |
Q |
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| T |
31629680 |
atgagggaaacaaataaaaaaaataaacacatgctaagatggattgatcattgatgtctttgtttaattaaagttcaaggttaattccctaatatatact |
31629779 |
T |
|
| Q |
601 |
attaatgttacaatgcttccatttcccaaatgcctaaggctttatctgattgatctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaa |
700 |
Q |
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| T |
31629780 |
attaatgttacaatgcttccatttcccaaatgcctaaggctttatctgattgatctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaa |
31629879 |
T |
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| Q |
701 |
gccaagtatgcaaaa |
715 |
Q |
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| T |
31629880 |
gccaagtatgcaaaa |
31629894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 561 - 712
Target Start/End: Original strand, 31651342 - 31651489
Alignment:
| Q |
561 |
tgtttaattaaagttcaaggttaattccctaatatatactattaatgttacaatgcttccatttcccaaatgcctaaggctttatctgattgatctaagc |
660 |
Q |
| |
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|||||||||| |||||| ||||||| |||||| ||||| | |||||||||||| |||||||||| |||||| ||||||| | ||||||||||| ||| |
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| T |
31651342 |
tgtttaattatagttcagggttaatcccctaa-atatagttttaatgttacaaat-ttccatttcctaaatgc-taaggcta-agctgattgatctgagc |
31651437 |
T |
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| Q |
661 |
agacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgca |
712 |
Q |
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| T |
31651438 |
agacaaaagaggaatgtgaacatctaatcaatatagcaaagcctagtatgca |
31651489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 646 - 712
Target Start/End: Original strand, 31646008 - 31646074
Alignment:
| Q |
646 |
ctgattgatctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgca |
712 |
Q |
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| T |
31646008 |
ctgattgatctaagcagacaaaagaggaatgtgaacatctaatcaatatagccaagcctagtatgca |
31646074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 602 - 712
Target Start/End: Original strand, 31656156 - 31656263
Alignment:
| Q |
602 |
ttaatgttacaatgcttccatttcccaaatgcctaaggctttatctgattgatctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaag |
701 |
Q |
| |
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|||||||||||| | |||||||||| |||||| ||||||| | ||||||||||| |||||||||| ||||||| |||||||||||||||| ||| ||| |
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| T |
31656156 |
ttaatgttacaa-gtttccatttcctaaatgc-taaggctaaa-ctgattgatctgagcagacaaaagaggaatgcgaacatctaatcaatatagcaaag |
31656252 |
T |
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| Q |
702 |
ccaagtatgca |
712 |
Q |
| |
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|| |||||||| |
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| T |
31656253 |
cctagtatgca |
31656263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 653 - 703
Target Start/End: Original strand, 31637098 - 31637148
Alignment:
| Q |
653 |
atctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaagcc |
703 |
Q |
| |
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|||| ||||| |||| |||||||||||||||||||||||| ||||||||| |
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| T |
31637098 |
atcttagcaggcaaaagaggaatgtgaacatctaatcaatatagccaagcc |
31637148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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